DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.713e-15
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 267
            EN   KHT  G+LSMANAG  TNGSQ F+ T  T WLDGKH VFG+V+EG ++++ IE   S +G  ++P   V IA  G+L
Sbjct:  117 ENFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIE--NSKTGAADRPVEAVKIAKSGEL 196          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.713e-15
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVV-EGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH   G++SMANAGP TNGSQ F+ T KT WLDG+H VFG++  +    V+AIE +GSS GR +K   I D G L
Sbjct:  100 ENFTLKHDR-GVISMANAGPNTNGSQFFITTVKTEWLDGRHVVFGKITNDSWPTVQAIEALGSSGGRPSKIAKITDIGLL 178          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.237e-15
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH   G+LSMANAG  TNGSQ F+ T  T  LDGKH VFGQV++G+ V + +E V     +  K  VIA+CG+L
Sbjct:  106 ENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.237e-15
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVV-IADCGQL 267
            EN   +HT  G+LSMANAG  TNGSQ F+ T  T WLDG+H VFG+V+EG +VV+AIE V    G   + VV I   G+L
Sbjct:  102 ENFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKIVKSGEL 181          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.237e-15
Identity = 43/80 (53.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 267
            EN   KH  PG LSMAN G  TNGSQ F+ T    WLDGKH VFG+V++GMDVV  IE V + S     K V+I + G+L
Sbjct:  117 ENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHVVFGEVLDGMDVVHYIENVKTDSRNMPVKEVIIVESGEL 196          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.921e-15
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN  +KH  P +LSMANAGP TNGSQ F+  A T  LDGKH VFG+V++G  VV+AIE+  +++ R    V I  CG L
Sbjct:   96 ENFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQETAADRPLADVRIDACGIL 174          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_ASPNG (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.921e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 243
            EN   +HT  G+LSMANAG  TNGSQ F+ T  T WLDG+H VFG+V+EG ++V  IE V    GR+++PV
Sbjct:  117 ENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEIVAQIENV--PKGRSDRPV 185          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.815e-15
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 270
            EN   KH  P +LSMANAGP TNGSQ F+ T  T  LDGKH VFG+V+    +V+ IE + ++S R ++ V I+  G LS
Sbjct:   92 ENFELKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLVRRIENIPTTSDRPDQAVTISSAGVLS 171          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.815e-15
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   46 KHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGR-TNKPVVIADCGQL 267
            +H  PG L MAN GP TNG Q +V T    WLDGKH VFG+V+EGMD + AIE V + +     +PVVI++CG++
Sbjct:  117 EHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVISNCGEI 191          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_ASPFU (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus fumigatus GN=cpr2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.983e-15
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 267
            EN   +HT  G+LSMANAG  TNGSQ F+ T  T WLDG+H VFG+V+EG +VV+ IE V    G +  + V I   GQ+
Sbjct:  118 ENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEVVEQIENVPKGPGDKPAETVKIVKSGQI 197          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PPIB_GIBZE1.713e-1552.44Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]
PPIA_NEOCA1.713e-1553.75Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
PPID_HUMAN2.237e-1551.9040 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
PPIB_ASPOR2.237e-1553.75Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
CYPD_YEAST2.237e-1553.75Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
PPID_ASHGO2.921e-1553.16Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
PPIB_ASPNG2.921e-1554.93Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPID_CRYNE3.815e-1550.00Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
CYPR_DROME3.815e-1552.00Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
PPIB_ASPFU4.983e-1551.25Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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