DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:314..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_TREPA (Probable peptidyl-prolyl cis-trans isomerase OS=Treponema pallidum GN=ppiB PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   46 KHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAI 201
            +H  PG+LSMANAGP TNGSQ F+    T WLDGKH VFG+VVEGM+VV AI
Sbjct:  124 RHDSPGVLSMANAGPGTNGSQFFITHVATPWLDGKHTVFGKVVEGMEVVHAI 175          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIH_RHIOR (Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus oryzae GN=cyp7 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.500e-15
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 267
            EN  +KHTG G+LSMAN+GP +NG Q F+      +LDGKH VFG++V+G+  ++ IE V +  + R   PV I +CGQ+
Sbjct:   99 ENFIEKHTGAGLLSMANSGPNSNGCQFFITCDACDFLDGKHVVFGRLVDGLLTLRKIENVATGPNNRPKLPVKITECGQM 178          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPR_CALVI (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.500e-15
Identity = 43/96 (44.79%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    1 NQSTAQNSPY------ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQL 267
            N  T   S Y      E    +H  PG L MAN GP TNG Q +V T    WL+GKH VFG+V+EGMD V AIE V + +      PV+I +CG++
Sbjct:   93 NDGTGSTSIYGDFFQDEALDVEHLRPGYLGMANRGPDTNGCQFYVTTVAAQWLNGKHTVFGKVIEGMDTVYAIEDVKTDTDDHPIDPVIIVNCGEM 188          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.110e-14
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVV---IADCGQL 267
            EN   KH  P +LSMAN GP TNGSQ F+ + +   LDGKH VFG+V++G++VVKAIE +   +G  +KPV    I  CG++
Sbjct:   97 ENLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVVKAIENL--ETGNEDKPVCKVEITHCGEM 176          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIL1_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhizopus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.894e-14
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   34 NXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVK 195
            N   +HTG GILSMANAGP TNGSQ F+  A T WLDGKH +FG+V +GM+VVK
Sbjct:   80 NPGLQHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSDGMNVVK 133          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIL1_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibberella zeae GN=CYP1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.894e-14
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   46 KHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 243
            KHTG GILSMANAGP TNGSQ FV  A T WLDGKH +FG+V  GM  +K +  V   +G  ++PV
Sbjct:   82 KHTGAGILSMANAGPNTNGSQFFVTLAPTPWLDGKHTIFGRVKSGMGTIKRMGLV--KTGSEDRPV 145          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_USTMA (Peptidyl-prolyl cis-trans isomerase D OS=Ustilago maydis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.473e-14
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQLS 270
            E+   KH  P +LSMANAG  TNGSQ F+ T  T  LDGKH VFG+V++G  VV+ +E V + +S R  + V I DCG+L+
Sbjct:  107 EDLTGKHDVPFLLSMANAGANTNGSQFFITTVPTPHLDGKHVVFGRVLKGKGVVRRVESVETVASDRPKEDVKIVDCGELT 187          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 267
            EN   KH   G LSMANAG  TNGSQ F+ TA+T  L+G H VFG+VVEG D+VK +E   +  S R     VI DCGQL
Sbjct:   96 ENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIE 204
            P EN   KH G G +SMANAGP TNGSQ F+   K  WLDGKH VFG+V++GM VV +IE
Sbjct:  118 PDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIE 177          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.219e-14
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQL 267
            P E     H  P +LSMANAGP TNGSQ F+ T +T  LD KH VFG+++ G  +V+ IE+  +    R  +PV I DCG+L
Sbjct:   91 PDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVDCGEL 172          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PPIB_TREPA6.508e-1569.23Probable peptidyl-prolyl cis-trans isomerase OS=Tr... [more]
PPIH_RHIOR8.500e-1547.50Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus ... [more]
CYPR_CALVI8.500e-1544.79Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
CYP8_CAEEL1.110e-1450.00Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
PPIL1_RHIOR1.894e-1466.67Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhiz... [more]
PPIL1_GIBZE1.894e-1459.09Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibb... [more]
PPID_USTMA2.473e-1450.62Peptidyl-prolyl cis-trans isomerase D OS=Ustilago ... [more]
PPID_DICDI3.230e-1455.00Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPIC_HUMAN3.230e-1461.67Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
PPID_YARLI4.219e-1447.56Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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