DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.219e-14
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 267
            EN   KH  P +LSMANAGP TNGSQ F+    T  LDGKH VFG+V+EG  +V+ IEK  +  G T+KP   V +  CG L
Sbjct:   95 ENFEIKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTEDG-TDKPMHDVKVEGCGLL 175          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.219e-14
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAK-TXWLDGKHXVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQ 264
            P EN   KH   G LSMAN G  TNGSQ F+ T +   WLDGKH VFGQVV+GMDVV  I+ V   ++ +  + V IA CG+
Sbjct:  117 PDENFTLKHDRKGRLSMANRGKDTNGSQFFITTTEEASWLDGKHVVFGQVVDGMDVVNYIQHVSRDANDKPLEAVKIAKCGE 198          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPV---VIADCGQL 267
            EN    H  P +LSMANAG  TNGSQ F+ T  T  L+GKH VFG+V++G  +V+ +E+     G  +KPV   +I+DCG+L
Sbjct:   98 ENFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQLER--CDKGENDKPVEDWIISDCGEL 177          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIE 204
            P EN   KH G G +SMANAGP TNGSQ F+   K  WLDGKH VFG+V++GM VV +IE
Sbjct:  118 PDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 177          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.510e-14
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIE 204
            P EN   KH G G +SMANAGP TNGSQ F+   K  WLDGKH VFG+V++GM VV +IE
Sbjct:  118 PDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 177          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIL1_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Neurospora crassa GN=cyp-1 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 7.196e-14
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   46 KHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKV 210
            KHTG G+LSMANAGP TNGSQ F+  A T WLDGKH +FG+V +GM V++ +  V
Sbjct:   82 KHTGAGVLSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVKKGMGVIRRMGMV 136          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIH_MOUSE (Peptidyl-prolyl cis-trans isomerase H OS=Mus musculus GN=Ppih PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.227e-13
Identity = 31/58 (53.45%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIE 204
            EN   +H+ PG+LSMAN+GP+TNG Q F+  +K  WLDGKH VFG++++G+ V++ IE
Sbjct:   98 ENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIE 155          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIL1_ASPFU (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus fumigatus GN=cyp1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.603e-13
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   46 KHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSS 222
            KHTG G+LSMAN+GP TNGSQ F+  A T WLDGKH +FG+V  GM V++ +  V ++S
Sbjct:   82 KHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDGKHTIFGRVKSGMRVIQRMGLVKTNS 140          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIL1_SCHPO (Peptidyl-prolyl cis-trans isomerase ppi1 OS=Schizosaccharomyces pombe GN=ppi1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   49 HTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVI 249
            HTG GILSMANAGP TN SQ F+  A T WLDGKH +FG+VV G+ V K +  + + SS R  +P+ I
Sbjct:   82 HTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLSVCKRMGLIRTDSSDRPIEPLKI 149          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_YEAST (Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccharomyces cerevisiae GN=CPR6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 42/82 (51.22%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 267
            EN   KH  P +LSMANAGP TNGSQ F+    T  LDGKH VFG+V++G  +V+ IE         NKP   V I DCG L
Sbjct:   95 ENFTVKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIQGKRIVRLIEN-QQCDQENNKPLRDVKIDDCGVL 175          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PPID_CANGA4.219e-1452.44Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
CYPB_YEAST4.219e-1452.44Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]
PPID_DEBHA5.510e-1447.56Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]
PPIC_MOUSE5.510e-1461.67Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIC_BOVIN5.510e-1461.67Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
PPIL1_NEUCR7.196e-1461.82Peptidyl-prolyl cis-trans isomerase-like 1 OS=Neur... [more]
PPIH_MOUSE1.227e-1353.45Peptidyl-prolyl cis-trans isomerase H OS=Mus muscu... [more]
PPIL1_ASPFU1.603e-1357.63Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspe... [more]
PPIL1_SCHPO2.094e-1355.88Peptidyl-prolyl cis-trans isomerase ppi1 OS=Schizo... [more]
PPID_YEAST2.094e-1351.22Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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