DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:314..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPE_DICDI (Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyostelium discoideum GN=cypE PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.023e-12
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   46 KHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 243
            KHTG GILSMAN+G  +NGSQ F+    T WLDGKH +FG+V  GM   K ++K+ +     +KP+
Sbjct:   83 KHTGAGILSMANSGVNSNGSQFFITFGPTPWLDGKHTIFGRVKSGM---KVVQKMNAMQTNNDKPI 145          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.559e-11
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   46 KHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP 240
            +H  P  LSMANAG  TNGSQ F+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  571 RHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 634          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.559e-11
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   46 KHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP 240
            +H  P  LSMANAG  TNGSQ F+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  571 RHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 634          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.559e-11
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   46 KHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP 240
            +H  P  LSMANAG  TNGSQ F+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  569 RHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 632          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.365e-11
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 267
            E    KH  P ++SMAN GP TNGSQ F+ T     L+  H VFG+VV G +VV  IE + ++S  R    VVI +CG+L
Sbjct:   97 EEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP9_SCHPO (Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosaccharomyces pombe GN=cyp9 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   46 KHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNK 237
            KH  P  +SMAN+GP TNGSQ F+ T  T WLDGKH +F +   G+DVV  IE+     G T+K
Sbjct:  534 KHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGLDVVHRIEQ-----GETDK 592          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIG_RAT (Peptidyl-prolyl cis-trans isomerase G OS=Rattus norvegicus GN=Ppig PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 267
            E+   KH    +LSMAN G  TNGSQ F+ T  T  LDG H VFGQV+ G +VV+ IE     +   +KP   V I  CG+L
Sbjct:   98 ESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIE--NQKTDAASKPFAEVRILSCGEL 177          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 267
            E+   KH    +LSMAN G  TNGSQ F+ T  T  LDG H VFGQV+ G +VV+ IE     +   +KP   V I  CG+L
Sbjct:   98 ESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIE--NQKTDAASKPFAEVRILSCGEL 177          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIG_HUMAN (Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 267
            E+   KH    +LSMAN G  TNGSQ F+ T  T  LDG H VFGQV+ G +VV+ IE     +   +KP   V I  CG+L
Sbjct:   98 ESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIE--NQKTDAASKPFAEVRILSCGEL 177          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 267
            E    KH+ P +LSMAN GP +N SQ F+ TA     +GKH VFG+VV+G +VV  I+ +      +    V+I++CG+L
Sbjct:   95 EKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISNCGEL 174          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYPE_DICDI3.023e-1250.00Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyo... [more]
PPWD1_PONAB2.559e-1152.31Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN2.559e-1152.31Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_BOVIN2.559e-1152.31Peptidylprolyl isomerase domain and WD repeat-cont... [more]
CYP1_BRUMA4.365e-1146.25Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
CYP9_SCHPO7.446e-1151.56Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosac... [more]
PPIG_RAT9.725e-1146.34Peptidyl-prolyl cis-trans isomerase G OS=Rattus no... [more]
PPIG_MOUSE9.725e-1146.34Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu... [more]
PPIG_HUMAN9.725e-1146.34Peptidyl-prolyl cis-trans isomerase G OS=Homo sapi... [more]
CYP9_CAEEL9.725e-1142.50Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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