DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:314..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.089e-21
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            P EN  K H  PG+LSMANAGP TNGSQ F+ T    WLDGKH VFG+VV+G D+VK +E +GS SG T   +V+A  G+L
Sbjct:   82 PDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.089e-21
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPG+LSMAN+G  TNGSQ F+ T  T WLDG+H VFG+VV+GMDVV  IE  G  SG     VVIAD G+L
Sbjct:  121 ENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 199          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.728e-21
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH+ PG+LSMANAGP TNGSQ F+ T  T WLDG+H VFG+V+EGMD+VK +E +GS SG  +K   I++ G+L
Sbjct:  119 ENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB2_RHIOR (Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus oryzae GN=cyp9 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.653e-21
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQLS 270
            P EN   +HT PG+LSMANAGP +NGSQ F+ T  T WLDGKH VFG+V+EGMDVV  IEK  ++   + N  VVIADCG LS
Sbjct:  114 PDENFKLRHTVPGLLSMANAGPDSNGSQFFITTVVTSWLDGKHVVFGKVLEGMDVVTKIEKTPTNYRSKPNVDVVIADCGLLS 196          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.077e-21
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN  KKH   G+LSMANAGP TNGSQ F+ T    WLDGKH VFG+V +GMD+VKAIE  G++SG+    +VI + G+L
Sbjct:  104 ENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.037e-20
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH  PG+LSMANAGP TNGSQ F+      WLDGKH VFG+VVEG+++++ +E  GS SG+T + +VI+DCG++
Sbjct:   92 ENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQLEANGSQSGQTKQAIVISDCGEI 170          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.354e-20
Identity = 48/79 (60.76%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPG LSMANAG  TNGSQ F+ T  T WLDG+H VFG+VV GMDVV  +E  G+ SG     VVI D G+L
Sbjct:  124 ENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPH_NEUCR (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Neurospora crassa GN=NCU00726 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.016e-20
Identity = 52/83 (62.65%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVV--EGMDVVKAIEKVGSSSG--RTNKPVVIADCGQL 267
            EN  KKH  PG+LSMANAGP TNGSQ FV T  T WLDG+H VFG+V   E M VVKA+E  GSSSG  R +K   I DCG L
Sbjct:  141 ENFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFGEVADDESMKVVKALEATGSSSGAIRYSKKPTIVDCGAL 223          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 6.719e-20
Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 267
            P EN   KH GPG +SMANAG  TNGSQ F+ T KT WLDGKH VFG+V+EGMDVV+ +E   + S  +  K V+I DCG++
Sbjct:  124 PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVDCGKI 205          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.719e-20
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 267
            P EN   KH GPG +SMANAG  TNGSQ F+ T KT WLDGKH VFG+V+EGM+VV+ +E   + S  +  K V+IADCG++
Sbjct:  124 PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 205          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYPH_YEAST2.089e-2158.02Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
CP19D_ARATH2.089e-2162.03Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIB_DICDI2.728e-2158.23Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIB2_RHIOR4.653e-2161.45Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus... [more]
CYPC_YEAST6.077e-2158.23Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPI2_SYNY31.037e-2055.70Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
CP20A_ARATH1.354e-2060.76Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CYPH_NEUCR3.016e-2062.65Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_RAT6.719e-2057.32Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIB_HUMAN6.719e-2057.32Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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