DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:314..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.776e-20
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 267
            P EN   KH GPG +SMANAG  TNGSQ F+ T KT WLDGKH VFG+V+EGMDVV+ +E   + S  +  K V IADCG +
Sbjct:  115 PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTI 196          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 96.2857 bits (238), Expect = 8.776e-20
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTN--KPVVIADCGQL 267
            P EN   KH GPG +SMANAG  TNGSQ F+ T KT WLDGKH VFG+V+EGMDVV+ +E    + GR    K V IADCG++
Sbjct:  124 PDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVEST-KTDGRDKPLKDVTIADCGKI 205          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.776e-20
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTG G+LSMANAGP TNGSQ F+   KT WLDG H VFGQ+VEG  V++ +E+ G+ SG     V I DCG++
Sbjct:   96 ENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGEI 174          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.955e-19
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH+ PG+LSMANAGP TNGSQ F+ T    WLDG H VFG+V + M++V  IE +GS+SG     VVI DCG L
Sbjct:   83 ENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASGAVKAKVVIEDCGVL 161          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.553e-19
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 267
            EN   KHT PG+LSMANAGP TNGSQ F+ T  T  LDGKH VFG+VVEGMDVV+ IE   + + R +KP   V IA CGQL
Sbjct:   90 ENFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIE--ATQTDRGDKPLSEVKIAKCGQL 169          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.335e-19
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH   G LSMAN+G  TNGSQ F+CT KT WLD KH VFG V+ G +VV+ +E+ GS SG  ++ +VI  CG+L
Sbjct:  221 ENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGEL 299          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYPH_ENCCU (Peptidyl-prolyl cis-trans isomerase OS=Encephalitozoon cuniculi GN=CPR1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.335e-19
Identity = 50/83 (60.24%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNK--PVVIADCGQL 267
            P EN   KHT  GILSMAN G  TNGSQ F+   KT WLD KH VFG+VVEGMDVV  I K GS SG+  K   + I DCG L
Sbjct:   87 PDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 169          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.335e-19
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIE 204
            EN   KHTGPGILSMANAGP TNGSQ F+CT KT WLD KH VFGQV+EGM +V+ +E
Sbjct:  177 ENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLE 234          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.355e-19
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 267
            P EN   +H G G LSMANAGP TNGSQ F+ T KT WLDGKH VFG+VVEGM++V+ IE +   S  R  K + IA CG +
Sbjct:  117 PDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHI 198          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.355e-19
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQ 264
            EN   KH     LSMANAGP TNGSQ F+ T    WLDGKH VFG+VV G+DVVK +E +GS+SG+ +K ++I DCG+
Sbjct:   84 ENFNHKHEAFS-LSMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVSGIDVVKKMESLGSTSGKPSKKIIIEDCGE 160          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PPIB_CHICK8.776e-2058.54Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIB_BOVIN8.776e-2059.04Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
CYP5_RHIOR8.776e-2056.96Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPIA2_RHIOR1.955e-1956.96Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
CYPX_USEUD2.553e-1962.20Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]
PPIE_DROME3.335e-1954.43Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
CYPH_ENCCU3.335e-1960.24Peptidyl-prolyl cis-trans isomerase OS=Encephalito... [more]
CP20C_ARATH3.335e-1972.41Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
PPIB_SCHMA4.355e-1957.32Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIA_SCHMA4.355e-1957.69Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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