DC900020

Overview
NameDC900020
Unique NameDC900020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:314..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.121e-17
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNK---PVVIADCGQL 267
            EN   +H+ PG+LSMAN+GP+TNG Q F+  +K  WLDGKH VFG++++G+ V++ IE V   +G  NK   PVVI+ CG++
Sbjct:   98 ENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.121e-17
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 267
            EN   KHTGPG+LSMAN+GP TNG Q F+ TA   +LDGKH VFG+V++G+  V+ IE V   +G  N+P   V IA+CG++
Sbjct:  100 ENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENV--PTGANNRPKLQVRIAECGEM 179          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.121e-17
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNK---PVVIADCGQL 267
            EN   +H+ PG+LSMAN+GP+TNG Q F+  +K  WLDGKH VFG++++G+ V++ IE V   +G  NK   PVVI+ CG++
Sbjct:   98 ENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.121e-17
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 270
            P EN   KH  P +LSMAN+GP TNGSQ F+ T  T  LDGKH VFG+V+ G  +V+ IE + + + +    V I DCG+LS
Sbjct:   99 PDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.121e-17
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVV--EGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KH   G+LSMANAG  TNGSQ F+ T  T WLDGKH VFG+V   + M +V+ IE +GSSSGRT+  V IA+ G L
Sbjct:   85 ENFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEVADDDSMALVRKIEALGSSSGRTSAKVTIAESGAL 165          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.076e-17
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 267
            EN   KHTGPG+LSMAN G  TN SQ F+   K   LD KH VFG V +GMD VK IE  GS  G  ++ ++I +CGQ+
Sbjct: 1007 ENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.076e-17
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   31 ENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQLS 270
            EN   KH G G LSMANAG  TNGSQ F+ T KT WLDG+H VFG+++EGMDVV+ IE+     G R  + V+IA  G ++
Sbjct:  111 ENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 191          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.324e-17
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 270
            P EN   KH  P +LSMAN+GP TNGSQ F+ T  T  LDGKH VFG+V+ G  VV+ IE + + + +    V IA+CG+L+
Sbjct:   94 PDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKIENMPTQADKPTTDVTIAECGELT 175          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.324e-17
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   25 PYENXXKKHTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 270
            P EN   KH  P +LSMAN+GP TNGSQ F+ T  T  LDGKH VFG+V+ G  VV+ +E + + + +  K V I +CG+L+
Sbjct:   93 PDENFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNTQADKPVKDVTIVECGELT 174          
BLAST of DC900020 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.324e-17
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   49 HTGPGILSMANAGPATNGSQXFVCTAKTXWLDGKHXVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIADCGQLS 270
            H+ P +LSMANAGP TNGSQ F+  + T  LDGKH VFG+V++G  VV+ IE   +++G   K PVVIADCGQLS
Sbjct:  100 HSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQLS 174          
The following BLAST results are available for this feature:
BLAST of DC900020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
PPIH_HUMAN3.121e-1750.00Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_CRYNE3.121e-1753.66Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
PPIH_BOVIN3.121e-1750.00Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
PPID_ASPFU3.121e-1750.00Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIA_STRCH3.121e-1756.79Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]
RBP2_BOVIN4.076e-1753.16E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
CYP5_CAEEL4.076e-1754.32Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
PPID_EMENI5.324e-1750.00Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
PPID_ASPOR5.324e-1748.78Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPID_AMAMU5.324e-1758.67Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]

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Properties
Property NameValue
Genbank descriptionDC900020 VSS Citrus sinensis cDNA clone VS27Q29 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900020 ID=DC900020; Name=DC900020; organism=Citrus sinensis; type=EST; length=512bp
AATCAATCTACGGCTCAAAATTCGCCGTATGAGAACTTNNNGAAGAAGCA
CACCGGCCCCGGAATCCTNTCCATGGCGAATGCCGGACCCGCAACCAACG
GATCTCAGNTCTTCGTNTGTACGGCCAAGACCGANTGGCTCGATGGGAAG
CACNTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGGTATATTT
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