DC900019

Overview
NameDC900019
Unique NameDC900019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900019 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.993e-36
Identity = 74/161 (45.96%), Postives = 105/161 (65.22%), Query Frame = 1
Query:    1 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 480
            LMVGLD +GKTTI+ K+   +     PT+GFN++T+ Y+  +  +WDVGGQ  IR  WR+YF+ T GL++VVDS+D  R+ + + EL  +L E+ L  + LL+ ANKQD+  A+   EI   L L S+ + RHW I    A +GEGL EG DWL  +IA++
Sbjct:   20 LMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGKVLNLESMDKSRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180          
BLAST of DC900019 vs. ExPASy Swiss-Prot
Match: ARL4A_RAT (ADP-ribosylation factor-like protein 4A OS=Rattus norvegicus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.453e-35
Identity = 74/166 (44.58%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 480
            +++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   24 VILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of DC900019 vs. ExPASy Swiss-Prot
Match: ARL4A_MOUSE (ADP-ribosylation factor-like protein 4A OS=Mus musculus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.453e-35
Identity = 74/166 (44.58%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 480
            +++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   24 VILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of DC900019 vs. ExPASy Swiss-Prot
Match: ARL4A_HUMAN (ADP-ribosylation factor-like protein 4A OS=Homo sapiens GN=ARL4A PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.453e-35
Identity = 74/166 (44.58%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 480
            +++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   24 VILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of DC900019 vs. ExPASy Swiss-Prot
Match: ARL4A_BOVIN (ADP-ribosylation factor-like protein 4A OS=Bos taurus GN=ARL4A PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.453e-35
Identity = 74/166 (44.58%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    1 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 480
            +++GLD AGKTT+LY+L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +
Sbjct:   24 VILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189          
BLAST of DC900019 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.453e-35
Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 1
Query:    1 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 480
            L++GLD AGKTTIL +     I T  PT+GFN++T+E+   +  +WDVGGQ  +R  WR+YF++T GL++VVDS DR R+     EL  +L E+ L  A LLV  NKQDLP A+++ EI + L L  +   HW +    A +GE L   +DWL  +IA +
Sbjct:   20 LLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDITTHHWLVAGVSAVTGEKLLSSMDWLIADIAKR 179          
BLAST of DC900019 vs. ExPASy Swiss-Prot
Match: ARL14_MOUSE (ADP-ribosylation factor-like protein 14 OS=Mus musculus GN=Arl14 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.227e-35
Identity = 71/152 (46.71%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD-SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEG 447
            L++GLD+AGK+T+LY+LK  E + TIPTIGFNVE V+ + +++ TVWDVGGQ+K+R +W  Y +N QGL++VVD S  + R+ ++R E   +L  + +++  +++ ANKQDLP A++A +IT    +  L   R+WY+Q  CA +GEGL +G
Sbjct:   17 LLLGLDSAGKSTLLYRLKFAETLATIPTIGFNVEMVQLQSSLTLTVWDVGGQEKMRTVWDCYCENAQGLMYVVDCSEGKKRLEDSRKEFKHILKNEHIKNTPVVILANKQDLPGALSAEDITRMFKVKKLCSNRNWYVQPCCAVTGEGLDDG 168          
BLAST of DC900019 vs. ExPASy Swiss-Prot
Match: ARL4D_MOUSE (ADP-ribosylation factor-like protein 4D OS=Mus musculus GN=Arl4d PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.360e-33
Identity = 73/166 (43.98%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    1 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 480
            +++GLD+AGKT++LY+LK  E V ++PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVDS + +R+ EA+ ELHR+    + +   +LV ANKQD P A++AAE+  +L +  L      ++Q+  A  G GL +GL+ L   I  +
Sbjct:   25 VVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDSAEIERLEEAKVELHRISKASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQACSAVDGLGLQQGLERLYEMILKR 190          
BLAST of DC900019 vs. ExPASy Swiss-Prot
Match: ARL4D_PONAB (ADP-ribosylation factor-like protein 4D OS=Pongo abelii GN=ARL4D PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.319e-33
Identity = 72/166 (43.37%), Postives = 107/166 (64.46%), Query Frame = 1
Query:    1 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 480
            +++GLD+AGKT++LY+LK  E V ++PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + +R+ EA+ ELHR+    + +   +LV ANKQD P A++AAE+  +L +  L      ++Q   A  G GL +GL+ L   I  +
Sbjct:   25 VVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLERLYEMILKR 190          
BLAST of DC900019 vs. ExPASy Swiss-Prot
Match: ARL4D_HUMAN (ADP-ribosylation factor-like protein 4D OS=Homo sapiens GN=ARL4D PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.319e-33
Identity = 72/166 (43.37%), Postives = 107/166 (64.46%), Query Frame = 1
Query:    1 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH-WYIQSTCATSGEGLYEGLDWLSNNIANK 480
            +++GLD+AGKT++LY+LK  E V ++PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + +R+ EA+ ELHR+    + +   +LV ANKQD P A++AAE+  +L +  L      ++Q   A  G GL +GL+ L   I  +
Sbjct:   25 VVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGLERLYEMILKR 190          
The following BLAST results are available for this feature:
BLAST of DC900019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARF5_ARATH4.993e-3645.96Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]
ARL4A_RAT1.453e-3544.58ADP-ribosylation factor-like protein 4A OS=Rattus ... [more]
ARL4A_MOUSE1.453e-3544.58ADP-ribosylation factor-like protein 4A OS=Mus mus... [more]
ARL4A_HUMAN1.453e-3544.58ADP-ribosylation factor-like protein 4A OS=Homo sa... [more]
ARL4A_BOVIN1.453e-3544.58ADP-ribosylation factor-like protein 4A OS=Bos tau... [more]
ARL2_DROME1.453e-3545.00ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARL14_MOUSE4.227e-3546.71ADP-ribosylation factor-like protein 14 OS=Mus mus... [more]
ARL4D_MOUSE1.360e-3343.98ADP-ribosylation factor-like protein 4D OS=Mus mus... [more]
ARL4D_PONAB2.319e-3343.37ADP-ribosylation factor-like protein 4D OS=Pongo a... [more]
ARL4D_HUMAN2.319e-3343.37ADP-ribosylation factor-like protein 4D OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionDC900019 VSS Citrus sinensis cDNA clone VS27Q28 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900019 ID=DC900019; Name=DC900019; organism=Citrus sinensis; type=EST; length=565bp
CTCATGGTAGGTCTCGATGCAGCTGGTAAGACTACTATCCTGTACAAGCT
TAAGCTCGGAGAGATCGTCACCACCATTCCTACCATTGGATTTAATGTAG
AGACCGTTGAGTATAAGAACATCAGCTTTACTGTCTGGGATGTCGGGGGT
CAAGACAAGATCCGACCTTTGTGGAGACATTATTTCCAAAACACCCAAGG
ACTCATCTTTGTGGTTGACAGTAATGATCGCGACCGTGTGGTAGAAGCTA
GGGATGAGTTGCACAGAATGTTGAATGAGGATGAATTGAGAGATGCTGTG
CTGCTTGTATTTGCTAACAAGCAAGATCTTCCAAATGCAATGAATGCTGC
TGAGATAACTGACAAGCTTGGCCTTCACTCTCTTCGCCAGCGCCACTGGT
ATATCCAGAGCACATGTGCCACTTCTGGTGAAGGGCTGTATGAGGGACTT
GACTGGCTCTCAAACAACATTGCAAACAAGGCATAGACAACTAAATTTTG
AGTTTTGGGTTGCCGCAACTGCTGAAATACAGAGTNACAACACATCTCAA
GGTGTTCTTGCTTTC
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