CN185756

Overview
NameCN185756
Unique NameCN185756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_DESHY (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glgC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 52/184 (28.26%), Postives = 92/184 (50.00%), Query Frame = -3
Query:  245 AYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM-GADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL-IPSGTII 787
            +YL+ GYW D+GTIE++YNAN+ + ++   D  F++    +++    L P  + + A + +S+IG GC I   ++  SV+     + EG++IE ++L+  ++ YE               + + K    + AI+  + RIGD          +E     +G       +T+I D L IP GT+I
Sbjct:  236 SYLFHGYWRDVGTIESYYNANMEVLQEERVD-KFFELKQRVFSNEEILAPQHLGERAKIHNSLIGNGCTILG-EVRDSVIASGVYVGEGSLIEQSILLPNSEIYE--------------DVRLHKTILGENAIVRAHCRIGDK---------REGNPPQEG-------ITVIGDHLHIPEGTVI 387          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_DESHD (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glgC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 52/184 (28.26%), Postives = 92/184 (50.00%), Query Frame = -3
Query:  245 AYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM-GADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL-IPSGTII 787
            +YL+ GYW D+GTIE++YNAN+ + ++   D  F++    +++    L P  + + A + +S+IG GC I   ++  SV+     + EG++IE ++L+  ++ YE               + + K    + AI+  + RIGD          +E     +G       +T+I D L IP GT+I
Sbjct:  236 SYLFHGYWRDVGTIESYYNANMEVLQEERVD-KFFELKQRVFSNEEILAPQHLGERAKIHNSLIGNGCTILG-EVRDSVIASGVYVGEGSLIEQSILLPNSEIYE--------------DVRLHKTILGENAIVRAHCRIGDK---------REGNPPQEG-------ITVIGDHLHIPEGTVI 387          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_MYCA9 (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=glgC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 37/134 (27.61%), Postives = 70/134 (52.24%), Query Frame = -3
Query:  371 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA-DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 769
            YW D+GT++AFY+A++ +     P F+ Y+R  PI  +   L P+K ++     +SV+G G ++    + +SV+     I +GA++E ++LM                     + +G+ + ++ AI+DKN  +G
Sbjct:  259 YWRDVGTLDAFYDAHMDLVSVH-PVFNLYNRRWPIRGESENLAPAKFVNGGSAQESVVGAGSIVSAASVRNSVLSSNVVIDDGAVVEGSVLMPG-------------------VRVGRGAVVRHAILDKNVVVG 372          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_LACS1 (Glucose-1-phosphate adenylyltransferase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=glgC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 48/154 (31.17%), Postives = 82/154 (53.25%), Query Frame = -3
Query:  338 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM-GADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 793
            V AY + GYW+D+GTI++ ++AN+    +   + +  DR+  IY++    PP  + + A++ D++I +G  I   K+ HS++     I  G+++ D+++M GA                     IGKN  I RAII + A IGD+V I  +D +
Sbjct:  233 VFAYNFKGYWKDVGTIDSLWHANMEFLDEN-NELNLQDRTWRIYSRNPIAPPQIIAETAEIKDAMIVDGSYIAG-KVDHSILSANVRIQTGSVVTDSVIMPGAK--------------------IGKNVTIHRAIIGEGAVIGDDVVIDGTDEI 364          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_CORGL (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium glutamicum GN=glgC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 46/167 (27.54%), Postives = 82/167 (49.10%), Query Frame = -3
Query:  278 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPR-YLPPSKMLDADVT-DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII 772
            GYW D+GTI+AFY  ++ +     P F+ Y+   PI+T     LPP+K +   +   S++  G +I    + +SV+     + EGA +E  +LM                     + IGK + ++ AI+DKN  + D  +++  D V++A R    + + +G V ++
Sbjct:  258 GYWRDVGTIDAFYECHMDLISVH-PIFNLYNSEWPIHTTSEGNLPPAKFVRGGIAQSSMVSSGSIISAGTVRNSVLSNNVVVEEGATVEGAVLMPG-------------------VRIGKGAVVRHAILDKNVVVRDG-ELIGVDQVRDAQR----FKVSAGGVVVV 399          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_BURXL (Glucose-1-phosphate adenylyltransferase OS=Burkholderia xenovorans (strain LB400) GN=glgC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 48/174 (27.59%), Postives = 78/174 (44.83%), Query Frame = -3
Query:  266 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKM------LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 769
            YW D+GTI+A++ ANL +    IP    YDRS PI+T    LPP+K       L     + ++  GCVI   +I  SV+     +S    I + +L+                     + +G +  +++ +ID+   I D   ++  D V +A R    Y    G+V +  +AL
Sbjct:  267 YWRDVGTIDAYWAANLDLAST-IPTLDLYDRSWPIWTYQEQLPPAKFVRDMKGLQGSGNNLIVCGGCVISGSQISRSVLSSNVKVSSFCNINEAVLL-------------------PQVTVGASCRLQKVVIDRGCAIPDGT-VIGEDPVSDAER---FYRTDDGVVLVTPEAL 416          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_NITEU (Glucose-1-phosphate adenylyltransferase OS=Nitrosomonas europaea GN=glgC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 42/179 (23.46%), Postives = 85/179 (47.49%), Query Frame = -3
Query:  254 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 769
            YW D+GT++A++ AN+ +T    PD + YD   PI+T    LPP+K +  D        DS++  GC+I    +  S++     I   + IED++++                     + I +++++KR +++K  +I + +K+  N D       +   +++    +T+I   ++  G
Sbjct:  276 YWRDVGTVDAYWKANIDLT-TITPDLNLYDEDWPIWTHQEQLPPAKFVFDDDDRRGQALDSMVSGGCIISGATVRRSLLFSNVQIRGYSTIEDSVIL-------------------PNVSIDRHAYLKRVVVEKECQIPEGLKVGFNPD------EDRKHFYVTDDGITLITPEMLGQG 428          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_MYCSS (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium sp. (strain MCS) GN=glgC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 39/135 (28.89%), Postives = 70/135 (51.85%), Query Frame = -3
Query:  371 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 772
            GYW D+GT++AFY+A++ +     P F+ Y++  PI  +   L P+K ++     +SV+G G +I    + +SV+     I +GAI+E +++M                       IG+ + ++ AI+DKN  +G
Sbjct:  258 GYWRDVGTLDAFYDAHMDLVSVH-PIFNLYNKRWPIRGESENLAPAKFVNGGSAQESVVGAGSIISAASVRNSVLSSNVYIDDGAIVEGSVIMPG-------------------TRIGRGAVVRHAILDKNVVVG 372          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_MYCLE (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium leprae GN=glgC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 44/165 (26.67%), Postives = 83/165 (50.30%), Query Frame = -3
Query:  278 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA-DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII 769
            YW D+GT++AFY+A++ +     P F+ Y++  PI  +   L P+K ++   V +SV+G G +I    + +SV+     +  GAI+E +++M                       +G+ + I+ AI+DKN  +G   ++V  D      R+ + + I +G V ++
Sbjct:  259 YWRDVGTLDAFYDAHMDLVSLR-PVFNLYNKRWPIRGESENLAPAKFVNGGSVQESVVGAGSIISAASVRNSVLSSNVVVDNGAIVEGSVIMPG-------------------ARVGRGAVIRHAILDKNVVVGPG-EMVGVD----PERDREHFAISAGGVVVV 398          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_MYCLB (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium leprae (strain Br4923) GN=glgC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 44/165 (26.67%), Postives = 83/165 (50.30%), Query Frame = -3
Query:  278 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA-DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII 769
            YW D+GT++AFY+A++ +     P F+ Y++  PI  +   L P+K ++   V +SV+G G +I    + +SV+     +  GAI+E +++M                       +G+ + I+ AI+DKN  +G   ++V  D      R+ + + I +G V ++
Sbjct:  259 YWRDVGTLDAFYDAHMDLVSLR-PVFNLYNKRWPIRGESENLAPAKFVNGGSVQESVVGAGSIISAASVRNSVLSSNVVVDNGAIVEGSVIMPG-------------------ARVGRGAVIRHAILDKNVVVGPG-EMVGVD----PERDREHFAISAGGVVVV 398          
The following BLAST results are available for this feature:
BLAST of CN185756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
GLGC_DESHY9.406e-1228.26Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_DESHD9.406e-1228.26Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_MYCA91.228e-1127.61Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_LACS11.228e-1131.17Glucose-1-phosphate adenylyltransferase OS=Lactoba... [more]
GLGC_CORGL1.228e-1127.54Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_BURXL1.228e-1127.59Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_NITEU1.604e-1123.46Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_MYCSS1.604e-1128.89Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_MYCLE1.604e-1126.67Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_MYCLB1.604e-1126.67Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185756 ID=CN185756; Name=CN185756; organism=Citrus sinensis; type=EST; length=795bp
GAGGTTTTTTTTTAGAATGAAAGATTTTATTTCTGCATAACTAGACCTTT
ACAGCATGTCCCTTTTTCCAGGTCCTATATTCCTCTCATAATTACATTAC
ACTGCCCGGAAATATACAGCTTATAGCAAAAAGATGGCCAAAGGTAAAGT
GGAAGCAGACTTGAGATTACGACATTCTCGAGCATAGAGGGGAAGGTACC
CGCAGCAGCGCAGCTTGGGATGAAACTGAGAAGACGACAGTTTAGATTAT
GGTTCCACTGGGAATCAAGGCATCCTTGATTATTGTGACAATCCCGCTCT
TGATGAAGTATCCATCTGTTTCCCTTGCTGCTTCTTGCACACTGTCACTG
TTGACGATCTTCACATTATCCCCAATTCGAGCATTTTTGTCAATTATTGC
TCTCTTGATGTGAGAATTCTTGCCAATACCAATTGGAACACTACCCTTTG
CAGCCAAAAACCTCCTGTCCGCGTCTGTCTCATAATAATCTGCTCCCATA
AGTAAAGTATCTTCGATAATTGCACCTTCTGATATGCAAGATCGAAGCCC
AACAACAGAATGGTGAATTTTGCAATTCTTAATCACACAGCCTTCACCAA
TTACACTATCAGTGACATCAGCATCAAGCATCTTAGAAGGAGGTAGATAT
CTAGGCTGTGTATAAATTGGAGCAGAACGGTCATAGAAGCTGAAATCCGG
AATTGGCTTTTTGGTGATCCCCAGATTCGCATTGTAGAAAGCCTCAATTG
TTCCAATGTCTTCCCAGTAGCCATCATATAAATATGCTTGCACTC
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