CN185756

Overview
NameCN185756
Unique NameCN185756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_FRATM (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 41/171 (23.98%), Postives = 82/171 (47.95%), Query Frame = -3
Query:  275 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 769
            YW D+GTI+AF+ ANL +    +P+ + YD+  P++T    LPP+K +         +T+++   GC++   +I  S++  +  +  G  I+  ++M                     + +G+N  +K+ +IDK   I   + ++  D +++A    + Y    G+V + K
Sbjct:  268 YWRDVGTIDAFWEANLDLAAN-MPELNIYDKDWPVWTAQEQLPPAKFVPDRNGNHGVITNTLASGGCIVLGSEISKSLMFSKVRVLAGCKIDQCVIM-------------------PEVVVGENCRLKKVVIDKGCDIPAGM-VIGEDPIEDA---KNFYRTDKGVVLVTK 414          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_FRATH (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 41/171 (23.98%), Postives = 82/171 (47.95%), Query Frame = -3
Query:  275 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 769
            YW D+GTI+AF+ ANL +    +P+ + YD+  P++T    LPP+K +         +T+++   GC++   +I  S++  +  +  G  I+  ++M                     + +G+N  +K+ +IDK   I   + ++  D +++A    + Y    G+V + K
Sbjct:  268 YWRDVGTIDAFWEANLDLAAN-MPELNIYDKDWPVWTAQEQLPPAKFVPDRNGNHGVITNTLASGGCIVLGSEISKSLMFSKVRVLAGCKIDQCVIM-------------------PEVVVGENCRLKKVVIDKGCDIPAGM-VIGEDPIEDA---KNFYRTDKGVVLVTK 414          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_FRATF (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 41/171 (23.98%), Postives = 82/171 (47.95%), Query Frame = -3
Query:  275 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 769
            YW D+GTI+AF+ ANL +    +P+ + YD+  P++T    LPP+K +         +T+++   GC++   +I  S++  +  +  G  I+  ++M                     + +G+N  +K+ +IDK   I   + ++  D +++A    + Y    G+V + K
Sbjct:  268 YWRDVGTIDAFWEANLDLAAN-MPELNIYDKDWPVWTAQEQLPPAKFVPDRNGNHGVITNTLASGGCIVLGSEISKSLMFSKVRVLAGCKIDQCVIM-------------------PEVVVGENCRLKKVVIDKGCDIPAGM-VIGEDPIEDA---KNFYRTDKGVVLVTK 414          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_CLOAB (Glucose-1-phosphate adenylyltransferase OS=Clostridium acetobutylicum GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 43/151 (28.48%), Postives = 79/151 (52.32%), Query Frame = -3
Query:  338 AYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKM-LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 787
            AY ++GYW+D+GTI++ + AN+ +        + YD    IY+    +PP  +  ++DV  S++ EGC++   K+++SV+     I    II ++++M                     + +G N  IK++II  NAR+ DNV +  +D++
Sbjct:  236 AYRFNGYWKDVGTIQSLWEANMDLLDDN-NSLNIYDPKWKIYSVNPTMPPQYIACNSDVKRSLVVEGCIVLG-KVYNSVLFPGVYIGRDTIITNSVIM-------------------PNVIVGNNVIIKKSIIGSNARVDDNVIVGTNDNI 365          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_BURPP (Glucose-1-phosphate adenylyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 46/174 (26.44%), Postives = 78/174 (44.83%), Query Frame = -3
Query:  266 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKM------LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 769
            YW D+GTI+A++ ANL +    IP    YDR+ PI+T    LPP+K       L     + ++  GCVI   +I  SV+     +S    I + +L+                     + +G +  +++ +ID+   I +   ++  D V +A R    Y    G+V +  +AL
Sbjct:  267 YWRDVGTIDAYWAANLDLA-STIPTLDLYDRNWPIWTYQEQLPPAKFVRDMKGLQGSGNNLIVCGGCVISGSQISRSVLSSNVKVSSFCNINEAVLL-------------------PQVTVGASCRLQKVVIDRGCAIPEGT-VIGEDPVSDAER---FYRTDDGVVLVTPEAL 416          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_AZOSE (Glucose-1-phosphate adenylyltransferase OS=Azoarcus sp. (strain EbN1) GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 49/178 (27.53%), Postives = 80/178 (44.94%), Query Frame = -3
Query:  260 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 793
            ++ Y    YW D+GTI+A+Y+AN   T    P F   +   PIY  P     +++ D  +  + +G G VI+   I  S++     + EGA + D+++M         DR            IGK + ++RAIID+   +   +KI         A     +  +SG+V + K  L P
Sbjct:  251 IRDYEEPAYWRDVGTIDAYYDANFD-TLGEFPKFCMSNPHWPIYANPDQTEAAQVHDGHIRTASLGAGVVIRRAVIERSLLRREVVVEEGAEVVDSIIM---------DRSV----------IGKGARVRRAIIDQYNFVPPGMKI----GYDPEADRQRFHISESGVVVVGKGQLKP 404          
The following BLAST results are available for this feature:
BLAST of CN185756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
GLGC_FRATM7.963e-1123.98Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_FRATH7.963e-1123.98Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_FRATF7.963e-1123.98Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_CLOAB7.963e-1128.48Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_BURPP7.963e-1126.44Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_AZOSE7.963e-1127.53Glucose-1-phosphate adenylyltransferase OS=Azoarcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185756 ID=CN185756; Name=CN185756; organism=Citrus sinensis; type=EST; length=795bp
GAGGTTTTTTTTTAGAATGAAAGATTTTATTTCTGCATAACTAGACCTTT
ACAGCATGTCCCTTTTTCCAGGTCCTATATTCCTCTCATAATTACATTAC
ACTGCCCGGAAATATACAGCTTATAGCAAAAAGATGGCCAAAGGTAAAGT
GGAAGCAGACTTGAGATTACGACATTCTCGAGCATAGAGGGGAAGGTACC
CGCAGCAGCGCAGCTTGGGATGAAACTGAGAAGACGACAGTTTAGATTAT
GGTTCCACTGGGAATCAAGGCATCCTTGATTATTGTGACAATCCCGCTCT
TGATGAAGTATCCATCTGTTTCCCTTGCTGCTTCTTGCACACTGTCACTG
TTGACGATCTTCACATTATCCCCAATTCGAGCATTTTTGTCAATTATTGC
TCTCTTGATGTGAGAATTCTTGCCAATACCAATTGGAACACTACCCTTTG
CAGCCAAAAACCTCCTGTCCGCGTCTGTCTCATAATAATCTGCTCCCATA
AGTAAAGTATCTTCGATAATTGCACCTTCTGATATGCAAGATCGAAGCCC
AACAACAGAATGGTGAATTTTGCAATTCTTAATCACACAGCCTTCACCAA
TTACACTATCAGTGACATCAGCATCAAGCATCTTAGAAGGAGGTAGATAT
CTAGGCTGTGTATAAATTGGAGCAGAACGGTCATAGAAGCTGAAATCCGG
AATTGGCTTTTTGGTGATCCCCAGATTCGCATTGTAGAAAGCCTCAATTG
TTCCAATGTCTTCCCAGTAGCCATCATATAAATATGCTTGCACTC
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