CN185756

Overview
NameCN185756
Unique NameCN185756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGL4_ARATH (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.641e-49
Identity = 89/183 (48.63%), Postives = 127/183 (69.40%), Query Frame = -3
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQ Y++  YWEDIGTI+ FY ANL + ++  P F FYD   P YT PR+LPP+K     + DS+I  GC ++ C +  S++G RS +  G  ++DTL++GADYY+T+++   L A+G VPIGIGK++ I++ IIDKNA+IG NV I+N   VQEA R  +G++I+SGI  I++ A I  GT+I
Sbjct:  342 VQGYIFRDYWEDIGTIKTFYEANLALVEER-PKFEFYDPETPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLGADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRPEEGFYIRSGITVIVEKATIQDGTVI 523          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGL3_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.799e-48
Identity = 87/183 (47.54%), Postives = 130/183 (71.04%), Query Frame = -3
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQ Y+Y  YWEDIGTI++FY AN+ + ++  P F FYD++ P YT PR+LPP+K     + +SVI  GC +  C I  S++G RS +  G  ++DTL++GAD Y+T+++   L A+G+VPIGIG+++ I++ IIDKNA+IG NV I+N D V+EA R  +G++I+SGI  +++ A I  GT+I
Sbjct:  340 VQGYIYRDYWEDIGTIKSFYEANIALVEEH-PKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIRKCIIDKNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGL2_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.799e-48
Identity = 87/183 (47.54%), Postives = 130/183 (71.04%), Query Frame = -3
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAY++  YWEDIGTI +F++AN+ + ++P P F FYD   P +T PRYLPP+K     + +++I  GC ++ CKI HS++G+RS ++ G+ +++ ++MGAD YET+ +   L ++G VPIG+G+N+ I   IID NARIG +V I N + VQEA R  +GY+I+SGIV I K+A I  GT++
Sbjct:  341 VQAYVFTDYWEDIGTIRSFFDANMALCEQP-PKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 522          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGL1_HORVU (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.799e-48
Identity = 87/183 (47.54%), Postives = 130/183 (71.04%), Query Frame = -3
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAY++  YWEDIGTI +F++AN+ + ++P P F FYD   P +T PRYLPP+K     + +++I  GC ++ CKI HS++G+RS ++ G+ +++ ++MGAD YET+ +   L ++G VPIG+G+N+ I   IID NARIG +V I N + VQEA R  +GY+I+SGIV I K+A I  GT++
Sbjct:  342 VQAYVFTDYWEDIGTIRSFFDANMALCEQP-PKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 523          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGL1_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Zea mays GN=SH2 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.006e-46
Identity = 86/183 (46.99%), Postives = 128/183 (69.95%), Query Frame = -3
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQA ++ GYWED+GTI++F++ANL +T++P   F FYD   P +T PR LPP+++    +  + I +GC+++ C I HSV+G+ S +S G  ++D+++MGAD YET+ +   L   G VP+GIG+N+ I+  IID NARIG NV I NS  +QEA    +GY+I+SGIV I+K+A I  G++I
Sbjct:  335 VQACIFTGYWEDVGTIKSFFDANLALTEQP-SKFDFYDPKTPFFTAPRCLPPTQLDKCKMKYAFISDGCLLRECNIEHSVIGVCSRVSSGCELKDSVMMGADTYETEEEASKLLLAGKVPVGIGRNTKIRNCIIDMNARIGKNVVITNSKGIQEADHPEEGYYIRSGIVVILKNATINDGSVI 516          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGL3_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic (Fragment) OS=Triticum aestivum GN=AGA.7 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.076e-43
Identity = 84/183 (45.90%), Postives = 124/183 (67.76%), Query Frame = -3
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            VQAY++  YWEDIGTI +F++AN  + ++P P F FYD   P +T PRYLPP+K     + +++I  GC ++ CKI H+     S ++ G+ +++ ++MGAD YET+ +   L ++G VPIG+G+N+ I   IID NARIG +V I N + VQEA R  +GY+I+SGIV I K+A I  GT++
Sbjct:  322 VQAYVFTDYWEDIGTIRSFFDANRALCEQP-PKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIILHGCFLRECKIEHTAF---SRLNSGSELKNAMMMGADSYETEDEMSRLMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 500          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGL2_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Zea mays GN=AGP2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.052e-39
Identity = 78/185 (42.16%), Postives = 120/185 (64.86%), Query Frame = -3
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDG--YFIKSGIVTIIKDALIPSGTII 793
            VQAY++  YWEDIGTI +F++AN+ + ++P P F FYD   P +T PRYLPP+K     + D++I  GC ++ C I HS+VG+ S ++ G  +++T++MGAD YET+ +   L A+G VPIG+G+N+ I   IID N + G   ++ N    +  + +  G    I+SGIV ++K+A I  GT+I
Sbjct:  339 VQAYVFTDYWEDIGTIRSFFDANMALCEQP-PKFEFYDPKTPFFTSPRYLPPTKSDKCRIKDAIISHGCFLRECAIEHSIVGVPSRLNSGCELKNTMMMGADLYETEDEISRLLAEGKVPIGVGENTKISNCIIDMNCQ-GWKERLHNKQRGRSKSPDRPGRRILIRSGIVVVLKNATIKDGTVI 521          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGL2_HORVU (Glucose-1-phosphate adenylyltransferase large subunit 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.953e-37
Identity = 71/137 (51.82%), Postives = 100/137 (72.99%), Query Frame = -3
Query:  383 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKN 793
            V+AYL++ YWEDIGTI++F+ ANL + ++P   FSFYD S P+YT  R LPPS +  + +TDS+I  GC +  C++ HSVVG+RS I     ++DT+++GAD+YETDA+R    A+G VPIGIG+N+ I+  IID N
Sbjct:   46 VKAYLFNDYWEDIGTIKSFFEANLALAEQP-SKFSFYDASKPMYTSRRNLPPSMISGSKITDSIISHGCFLDKCRVEHSVVGIRSRIGSNVHLKDTVMLGADFYETDAERGDQLAEGKVPIGIGENTSIQNCIIDMN 181          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_CORK4 (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=glgC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 52/169 (30.77%), Postives = 88/169 (52.07%), Query Frame = -3
Query:  272 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYT-QPRYLPPSKMLDADVT-DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKD 772
            GYW D+GT++AFY A++ +     P F+ Y+R  PI+T     LPP+K +   +   S++  GC+I    + +SV+G    + EGA +E  +LM                     + IGK + ++ AI+DKN R+GDN  ++  D  +++ R T     + G+V + K+
Sbjct:  258 GYWRDVGTVDAFYEAHMDLI-SVYPVFNLYNRKWPIHTSDDSNLPPAKFVKGGIAQSSIVAAGCIISAGTVRNSVLGPGVVVEEGASVEGCVLMDG-------------------VRIGKGAVVRHAILDKNVRVGDNA-LIGVDRARDSERFT---LSQGGVVCVPKN 402          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_THEAB (Glucose-1-phosphate adenylyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.826e-16
Identity = 59/181 (32.60%), Postives = 101/181 (55.80%), Query Frame = -3
Query:  257 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA-DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII-KDALIPS 793
            V A+ +DGYW+D+GTI +++ +NL +T +PIP F+ +D +  IYT  + +PP+ + D+  V +S+I EGC I    + +SV+     I +G+I++++++M                     + IG+N +I+ AII +N  IGD VKI     V E A       + +  +T+I  D++I S
Sbjct:  231 VFAFPFDGYWKDVGTIYSYWESNLELT-RPIPPFNIHDENWRIYTHSKEMPPAYIADSTKVKNSLISEGCEIYGA-VSNSVLAQGVEIGKGSIVKNSVIMS-------------------NVRIGENCYIENAIIAENVVIGDFVKI----GVGEFAESKLNKKVYNSEITVIGMDSIIES 386          
The following BLAST results are available for this feature:
BLAST of CN185756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
GLGL4_ARATH5.641e-4948.63Probable glucose-1-phosphate adenylyltransferase l... [more]
GLGL3_ARATH2.799e-4847.54Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_WHEAT2.799e-4847.54Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_HORVU2.799e-4847.54Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_MAIZE2.006e-4646.99Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_WHEAT2.076e-4345.90Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_MAIZE4.052e-3942.16Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_HORVU4.953e-3751.82Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_CORK41.657e-1630.77Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_THEAB2.826e-1632.60Glucose-1-phosphate adenylyltransferase OS=Thermos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001N05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185756 ID=CN185756; Name=CN185756; organism=Citrus sinensis; type=EST; length=795bp
GAGGTTTTTTTTTAGAATGAAAGATTTTATTTCTGCATAACTAGACCTTT
ACAGCATGTCCCTTTTTCCAGGTCCTATATTCCTCTCATAATTACATTAC
ACTGCCCGGAAATATACAGCTTATAGCAAAAAGATGGCCAAAGGTAAAGT
GGAAGCAGACTTGAGATTACGACATTCTCGAGCATAGAGGGGAAGGTACC
CGCAGCAGCGCAGCTTGGGATGAAACTGAGAAGACGACAGTTTAGATTAT
GGTTCCACTGGGAATCAAGGCATCCTTGATTATTGTGACAATCCCGCTCT
TGATGAAGTATCCATCTGTTTCCCTTGCTGCTTCTTGCACACTGTCACTG
TTGACGATCTTCACATTATCCCCAATTCGAGCATTTTTGTCAATTATTGC
TCTCTTGATGTGAGAATTCTTGCCAATACCAATTGGAACACTACCCTTTG
CAGCCAAAAACCTCCTGTCCGCGTCTGTCTCATAATAATCTGCTCCCATA
AGTAAAGTATCTTCGATAATTGCACCTTCTGATATGCAAGATCGAAGCCC
AACAACAGAATGGTGAATTTTGCAATTCTTAATCACACAGCCTTCACCAA
TTACACTATCAGTGACATCAGCATCAAGCATCTTAGAAGGAGGTAGATAT
CTAGGCTGTGTATAAATTGGAGCAGAACGGTCATAGAAGCTGAAATCCGG
AATTGGCTTTTTGGTGATCCCCAGATTCGCATTGTAGAAAGCCTCAATTG
TTCCAATGTCTTCCCAGTAGCCATCATATAAATATGCTTGCACTC
back to top