CN185756

Overview
NameCN185756
Unique NameCN185756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3060 contig Csv1_Contig3060:140..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_THEM4 (Glucose-1-phosphate adenylyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16
Identity = 51/147 (34.69%), Postives = 85/147 (57.82%), Query Frame = -3
Query:  356 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 793
            V A+ ++GYW+D+GTI +++ +NL +T +PIP F+ +D +  IYT    +PP+ +  DA V +S+I EGC I   ++++SV+     + EG II+++++M                     + IG N  I+ AII +N  IG+ VKI
Sbjct:  231 VYAFPFEGYWKDVGTIYSYWESNLELT-RPIPPFNIHDENWKIYTHSEEMPPAYISDDARVKNSLISEGCEIYG-EVYNSVLAQGVEVGEGVIIKNSVVMSR-------------------VRIGNNCFIENAIIAENVVIGNEVKI 356          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_THERP (Glucose-1-phosphate adenylyltransferase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15
Identity = 52/188 (27.66%), Postives = 98/188 (52.13%), Query Frame = -3
Query:  245 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI----VNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 793
            V  Y +DGYW+D+GT+++++ AN+ + +   P  + YD +  I+T+    PP+K+L+ A V  S++  GC+++   +  S++     +  GA++ D+++M      TD+              IG  + + R IIDK+  IG N  +     NS +  E +R      + +GI  + ++A++P G  I
Sbjct:  232 VATYRFDGYWQDVGTVQSYWEANMALLEDE-PKLNLYDPNWRIHTRSEERPPAKILEGATVIRSLLSNGCIVEGATVIRSILSPGVIVKAGAVVRDSIVM------TDS-------------VIGPGAVVDRCIIDKHVTIGANAYLGWGDDNSPNWLEPSR------LNTGITLVGRNAVVPPGVRI 393          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_EUBE2 (Glucose-1-phosphate adenylyltransferase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15
Identity = 54/177 (30.51%), Postives = 95/177 (53.67%), Query Frame = -3
Query:  260 AYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 787
            AY Y+GYW+D+GT+ +++ AN+ +    IP F+ Y+    IYT+   +PP  +  DA +  S+IG+G  +   ++ +SV+G    I EG +I D+++M   +                   IGKN+ I ++II ++  IG+NV++      +EA          SG+VT+ + ++IP
Sbjct:  234 AYEYNGYWKDVGTLSSYWEANMELI-DIIPIFNLYEEFWKIYTKTDTIPPQYIAKDAYIEKSIIGDGTEVYG-RVFNSVIGSGVVIEEGCVIRDSIIMNNSH-------------------IGKNTTITKSIIAEDVTIGENVEL---GVGEEAENVKFPKIYNSGLVTVGEWSVIP 386          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBCH (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio cholerae GN=glgC1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15
Identity = 56/174 (32.18%), Postives = 89/174 (51.15%), Query Frame = -3
Query:  263 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-----ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 769
            YW D+GTIE++++A++ +  K  P+FS Y+RS P++T    LPP+  +D       +TDS+I  G  I+   I+ SV+G RS I+ G+ I +++++G                    + IG    IKRAIIDK+  I     I+  D   +  R    +    GIV I K + +
Sbjct:  254 YWRDVGTIESYWSAHMDLLDKD-PEFSLYNRSWPLHTYYPPLPPATFVDVKDKKVKITDSLISGGSYIQGSTIYKSVLGFRSNIAAGSFISESVILG-------------------DVKIGAGCTIKRAIIDKDVEIAAGT-IIGEDLEMDRKR---FHVSDEGIVVIAKGSKV 403          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_PHOPR (Glucose-1-phosphate adenylyltransferase OS=Photobacterium profundum GN=glgC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 52/176 (29.55%), Postives = 86/176 (48.86%), Query Frame = -3
Query:  263 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA-----DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK-SGIVTIIKDALI 772
            GYW D+GTIEA++ A++ +  +  P FS Y+R   ++T    LPP+ +LD+     D+ + +I  G  I+  +IH S++G R+ +    +I +++++G                    + IG N  I++AIIDKN  I     I      +    +   Y +   GIV I K A I
Sbjct:  253 GYWRDVGTIEAYWQAHMDLLSEDAP-FSLYNRQWQLHTHYPPLPPATILDSENSKVDINNCMISAGSYIRGAQIHKSILGFRTNVDHNTMISESVILG-------------------DVKIGANCSIRKAIIDKNVHIAPGTVI-----GENPEEDKKNYHVSDEGIVVIPKGAKI 403          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_BIFA0 (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=glgC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 51/181 (28.18%), Postives = 87/181 (48.07%), Query Frame = -3
Query:  245 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA------DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            YW D+GTI  FY+A++ +    IP+F+ Y+   PIYT    LPP+K + A        TDS++  G ++   +IHHSV+     +   + + D++L                      + I + + + RAI+DKN  + +N   V  D   + AR   G+ + S  +T+     +P GT++
Sbjct:  262 YWRDVGTIRQFYDAHMDLISY-IPEFNLYNMEWPIYTSSGNLPPAKFVHAAGDRIGHATDSIVSPGVIVSGGEIHHSVISPNVRVHSWSQVNDSILFD-------------------NVEINRRARVNRAILDKNVVLTEN-STVGLDVEHDLAR---GFTVTSDGITV-----VPKGTVV 413          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_ACIC1 (Glucose-1-phosphate adenylyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glgC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 51/171 (29.82%), Postives = 89/171 (52.05%), Query Frame = -3
Query:  263 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML--DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 769
            YW D+GT++A+Y+A+  +     P F+ Y++  PIYT  R LPP+K++     V DS++ +G ++ + ++  SV+     +  GA+IE  +L+                     + IG+ + ++ AIIDKN  + D   I   D  ++A R T     + GIV I K+A++
Sbjct:  266 YWRDVGTLDAYYDAHQDLVSVH-PIFNLYNQDWPIYTHHRPLPPAKIVHDGTSVVDSLLSDGVIVADARVSRSVLSPSVYVDRGAVIEGCVLLD-------------------NVHIGRGAVVRNAIIDKNVVVPDGAAI-GVDPQRDAERFT---VSEGGIVVIAKNAVV 412          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_CLOTH (Glucose-1-phosphate adenylyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glgC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.550e-14
Identity = 50/180 (27.78%), Postives = 94/180 (52.22%), Query Frame = -3
Query:  254 AYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML--DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 787
            AY ++GYW D+GTI+A++ +N+ +  + +P+F+ +D +  IYT P  + P+  +     V  S++ EGC+I    + +SV+     +SEGA I D+++M                       IG+N+ I + II +  ++G NV++   +++     E   +   SGI  + + A++P G
Sbjct:  236 AYKFNGYWRDVGTIQAYWESNMDLISR-VPEFNLFDPAWKIYT-PNPVKPAHYIGPTGSVKKSIVAEGCMIYG-SVRNSVLFPGVYVSEGAEIVDSIVMSDSV-------------------IGENTQIYKCIIGEEVKVGKNVRMGIGENI---PNELKPHLYDSGITVVGEKAVVPDG 390          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_RHOSR (Glucose-1-phosphate adenylyltransferase OS=Rhodococcus sp. (strain RHA1) GN=glgC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 45/151 (29.80%), Postives = 79/151 (52.32%), Query Frame = -3
Query:  323 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT-DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 772
            GYW D+GT++AFY+A++ +     P F+ Y+R  PI  +   L P+K +   +  +SV+G GC++    + +SV+     +  GA +E ++LM                     + IGK + ++RAI+DKN  +GD  +I+  D  ++  R
Sbjct:  258 GYWRDVGTLDAFYDAHMDLVSVH-PIFNLYNRRWPIRGETENLAPAKFVQGGLAQESVVGAGCILSAATVRNSVLSSNVMVDSGATVEGSVLMPG-------------------VRIGKGAVVRRAILDKNVVVGDG-EIIGVDLERDKQR 387          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_RHOOB (Glucose-1-phosphate adenylyltransferase OS=Rhodococcus opacus (strain B4) GN=glgC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 45/151 (29.80%), Postives = 79/151 (52.32%), Query Frame = -3
Query:  323 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT-DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 772
            GYW D+GT++AFY+A++ +     P F+ Y+R  PI  +   L P+K +   +  +SV+G GC++    + +SV+     +  GA +E ++LM                     + IGK + ++RAI+DKN  +GD  +I+  D  ++  R
Sbjct:  258 GYWRDVGTLDAFYDAHMDLVSVH-PIFNLYNRRWPIRGETENLAPAKFVQGGLAQESVVGAGCILSAATVRNSVLSSNVMVDSGATVEGSVLMPG-------------------VRIGKGAVVRRAILDKNVVVGDG-EIIGVDLERDKQR 387          
The following BLAST results are available for this feature:
BLAST of CN185756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
GLGC_THEM44.820e-1634.69Glucose-1-phosphate adenylyltransferase OS=Thermos... [more]
GLGC_THERP1.402e-1527.66Glucose-1-phosphate adenylyltransferase OS=Thermom... [more]
GLGC_EUBE21.402e-1530.51Glucose-1-phosphate adenylyltransferase OS=Eubacte... [more]
GLGC1_VIBCH1.402e-1532.18Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_PHOPR6.960e-1529.55Glucose-1-phosphate adenylyltransferase OS=Photoba... [more]
GLGC_BIFA09.090e-1528.18Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_ACIC19.090e-1529.82Glucose-1-phosphate adenylyltransferase OS=Acidoth... [more]
GLGC_CLOTH1.550e-1427.78Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_RHOSR2.025e-1429.80Glucose-1-phosphate adenylyltransferase OS=Rhodoco... [more]
GLGC_RHOOB2.025e-1429.80Glucose-1-phosphate adenylyltransferase OS=Rhodoco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185756 ID=CN185756; Name=CN185756; organism=Citrus sinensis; type=EST; length=795bp
GAGGTTTTTTTTTAGAATGAAAGATTTTATTTCTGCATAACTAGACCTTT
ACAGCATGTCCCTTTTTCCAGGTCCTATATTCCTCTCATAATTACATTAC
ACTGCCCGGAAATATACAGCTTATAGCAAAAAGATGGCCAAAGGTAAAGT
GGAAGCAGACTTGAGATTACGACATTCTCGAGCATAGAGGGGAAGGTACC
CGCAGCAGCGCAGCTTGGGATGAAACTGAGAAGACGACAGTTTAGATTAT
GGTTCCACTGGGAATCAAGGCATCCTTGATTATTGTGACAATCCCGCTCT
TGATGAAGTATCCATCTGTTTCCCTTGCTGCTTCTTGCACACTGTCACTG
TTGACGATCTTCACATTATCCCCAATTCGAGCATTTTTGTCAATTATTGC
TCTCTTGATGTGAGAATTCTTGCCAATACCAATTGGAACACTACCCTTTG
CAGCCAAAAACCTCCTGTCCGCGTCTGTCTCATAATAATCTGCTCCCATA
AGTAAAGTATCTTCGATAATTGCACCTTCTGATATGCAAGATCGAAGCCC
AACAACAGAATGGTGAATTTTGCAATTCTTAATCACACAGCCTTCACCAA
TTACACTATCAGTGACATCAGCATCAAGCATCTTAGAAGGAGGTAGATAT
CTAGGCTGTGTATAAATTGGAGCAGAACGGTCATAGAAGCTGAAATCCGG
AATTGGCTTTTTGGTGATCCCCAGATTCGCATTGTAGAAAGCCTCAATTG
TTCCAATGTCTTCCCAGTAGCCATCATATAAATATGCTTGCACTC
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