CN185756

Overview
NameCN185756
Unique NameCN185756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_STRU0 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=glgC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.645e-14
Identity = 51/154 (33.12%), Postives = 85/154 (55.19%), Query Frame = -3
Query:  335 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQ 793
            V  Y ++GYW+D+GTIE+ + AN+    +  P     +RS  IY++    PP+ + + A+VTDS++ +GC +   K+ HS++     + +GA I+D+ +M                 G+V   IG+ + I RAII + A IG+NV I  +D +Q
Sbjct:  233 VYTYNFNGYWKDVGTIESLWEANMEYIAENNP-LDSRNRSWKIYSKNHIAPPNFISEHAEVTDSLVVDGCFVTG-KVDHSILSANVHMKQGAEIKDSFIM----------------SGAV---IGEGAKINRAIIGEGAIIGNNVVIDGTDEIQ 365          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_STRMU (Glucose-1-phosphate adenylyltransferase OS=Streptococcus mutans GN=glgC PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.645e-14
Identity = 50/154 (32.47%), Postives = 85/154 (55.19%), Query Frame = -3
Query:  335 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQ 793
            V  Y ++GYW+D+GTIE+ + AN+    +   D    DRS  IY++    PP+ +  +A V DS++ +GC +   K+ HS++     + EGA I+D+ +M                 G+V   IG+ + I RAI+ + A+IG++V+I  ++ VQ
Sbjct:  233 VYTYNFNGYWKDVGTIESLWEANMEYIGED-NDLHSRDRSWKIYSKNLIAPPNFITEEAHVKDSLVVDGCFVSG-KVEHSILSTNVQVKEGAQIKDSFIM----------------SGAV---IGEGAKITRAIVGEGAKIGEDVEIDGTEEVQ 365          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_ARTAT (Glucose-1-phosphate adenylyltransferase OS=Arthrobacter aurescens (strain TC1) GN=glgC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.645e-14
Identity = 48/177 (27.12%), Postives = 89/177 (50.28%), Query Frame = -3
Query:  260 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFI-KSGIVTIIKDALIP 769
            YW D+GTI++FY+A++ +   P+P F+ Y+   PIYT+    PP+K +  +        DS++  G V+    +  SV+   + ++ G+ ++D++LM                     + +G+ + IKRAI+DKN ++     I     +  A  +  GY + +SGI  + K  ++P
Sbjct:  262 YWRDVGTIDSFYDAHMDLI-SPVPIFNLYNSEWPIYTRQSISPPAKFVRGENNTVGTALDSIVASGVVVSGGIVEGSVLSNDAYVAAGSRVQDSVLMD-------------------KVRVGEGAVIKRAILDKNVKVPAGAAI----GLDPALDKARGYKVTESGITVLAKGQVVP 414          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_CLOCE (Glucose-1-phosphate adenylyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glgC PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14
Identity = 54/183 (29.51%), Postives = 91/183 (49.73%), Query Frame = -3
Query:  245 AYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML--DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 787
            AY Y GYW D+GTI+AF+ +N+ +  + +P F+ +D    IYT P  + P+  +   A V  S+I EGC +    I +S++   + I EGA+I+D+++M                       + KN++I R+II + A IG+  ++     V     E       SGI  + + + IP+  +I
Sbjct:  236 AYQYSGYWRDVGTIQAFWESNMDLVSR-VPQFNLFDPEWRIYT-PNPVKPAHYIASSACVKKSIIAEGCSVHGTVI-NSILFPGAYIEEGAVIQDSIIMSNS-------------------RVCKNAYINRSIISEQAIIGEKARLGEGPDV---PNEYKPGIYDSGITVVGEKSSIPADAVI 393          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_MYXXD (Glucose-1-phosphate adenylyltransferase OS=Myxococcus xanthus (strain DK 1622) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14
Identity = 51/173 (29.48%), Postives = 85/173 (49.13%), Query Frame = -3
Query:  278 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD--------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII 772
            GYW D+G I+ +Y +N+ + +   P F+ Y+   PI+TQP   PP+K + AD          D+++ EGC+I    +  SV+  +  ++  + +ED+LL     +E               + IG+   I+RAIIDKN  I   + I   D V++  R    + +  G V +I
Sbjct:  255 GYWRDVGNIDVYYQSNMDLVEVD-PTFNLYNDRWPIHTQPNNYPPAKFVFADEQNHRVGHAMDTLVAEGCIISGGSVRRSVLSPKVRVNSYSEVEDSLL-----FEN--------------VTIGRRCRIRRAIIDKNVEIPPGMTI-GFDPVEDRRR----FHVTPGGVVVI 402          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_FERNB (Glucose-1-phosphate adenylyltransferase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14
Identity = 47/147 (31.97%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  356 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 793
            V AY ++GYW+D+GTI++++  NL +  +PIP F+ +D +   YT+   + P+ + +  +V +S+I EGC I    + +SV+     I EGAI++++++M                     + +GKN  I+ AII +N  I D  KI
Sbjct:  231 VYAYPFEGYWQDVGTIQSYWETNLELV-RPIPPFNLHDPNWRFYTRSEEMNPAYISENGNVRNSIISEGCEIYG-SVENSVISQGVFIDEGAIVKNSVIM-------------------TKVEVGKNVIIEDAIIAENTIIKDGCKI 356          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_VIBFM (Glucose-1-phosphate adenylyltransferase OS=Vibrio fischeri (strain MJ11) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 53/171 (30.99%), Postives = 85/171 (49.71%), Query Frame = -3
Query:  275 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIK 769
            YW D+GTIE+++ A++ + KK  P FS Y+R  P++T    LPP+   D+D     + DS++  G  I+  +I  SV+G RS I+    I +++L+G                    + +GK   ++R I+DK A I    +I VN    ++    +D      GIV I K
Sbjct:  254 YWRDVGTIESYWEAHMDLLKKDAP-FSLYNRKWPLHTYYPPLPPATFSDSDNGRVQIIDSLVCGGSYIRGSRIEKSVLGFRSNIASACDISESILLG-------------------NVKVGKGCVLRRVIVDKGADIAPGTEIGVNLQEDKKKYHVSD-----EGIVVIPK 399          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_VIBF1 (Glucose-1-phosphate adenylyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 53/171 (30.99%), Postives = 85/171 (49.71%), Query Frame = -3
Query:  275 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIK 769
            YW D+GTIE+++ A++ + KK  P FS Y+R  P++T    LPP+   D+D     + DS++  G  I+  +I  SV+G RS I+    I +++L+G                    + +GK   ++R I+DK A I    +I VN    ++    +D      GIV I K
Sbjct:  254 YWRDVGTIESYWEAHMDLLKKDAP-FSLYNRKWPLHTYYPPLPPATFSDSDNGRVQIIDSLVCGGSYIRGSRIEKSVLGFRSNIASACDISESILLG-------------------NVKVGKGCVLRRVIVDKGADIAPGTEIGVNLQEDKKRYHVSD-----EGIVVIPK 399          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_ANADF (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 52/174 (29.89%), Postives = 85/174 (48.85%), Query Frame = -3
Query:  275 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD--------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 772
            GYW D+G+++A+Y AN+ +     P FS Y+   PI+T     PP K +  +         TDS++ EGC+I     HH ++  +  I+  +++ED++L     +E               + IG++  I+RAI+DK+  I  N  I   D   +  R    +  +SGIV I K
Sbjct:  256 GYWRDVGSLDAYYQANMDLVDVD-PSFSLYNDRWPIFTAQHNFPPVKFVFNNQTEGRVGYATDSLVSEGCIISGGHAHHCILSPKVRINSYSLVEDSIL-----FEN--------------VNIGRHCKIRRAIVDKHVEIPANTTI-GYDLEHDRKR---FHVTESGIVVIPK 405          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_METFK (Glucose-1-phosphate adenylyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.313e-13
Identity = 47/175 (26.86%), Postives = 88/175 (50.29%), Query Frame = -3
Query:  266 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIKDAL 769
            YW D+GT++A++ AN+ +T K +P+ + YDR  PI+T    LPP+K +          TDS+I  GC++    + +SV+     ++  + IE ++++                     + IG++  ++R ++D  ARI D ++I VN +  ++    T+      G+V +  D L
Sbjct:  270 YWRDVGTVDAYWEANMELT-KVVPELNLYDRQWPIWTYQEQLPPAKFVFDNEERRGQATDSLISGGCIVSGANVRNSVLFSDVRVNSYSSIEQSVIL-------------------PKVDIGRHVTLRRVVVDSGARIPDGMEIGVNLELDRKRFHITE-----QGVVLVTPDML 419          
The following BLAST results are available for this feature:
BLAST of CN185756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
GLGC_STRU02.645e-1433.12Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRMU2.645e-1432.47Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_ARTAT2.645e-1427.12Glucose-1-phosphate adenylyltransferase OS=Arthrob... [more]
GLGC_CLOCE3.454e-1429.51Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_MYXXD5.892e-1429.48Glucose-1-phosphate adenylyltransferase OS=Myxococ... [more]
GLGC_FERNB5.892e-1431.97Glucose-1-phosphate adenylyltransferase OS=Fervido... [more]
GLGC_VIBFM1.005e-1330.99Glucose-1-phosphate adenylyltransferase OS=Vibrio ... [more]
GLGC_VIBF11.005e-1330.99Glucose-1-phosphate adenylyltransferase OS=Vibrio ... [more]
GLGC_ANADF1.005e-1329.89Glucose-1-phosphate adenylyltransferase OS=Anaerom... [more]
GLGC_METFK1.313e-1326.86Glucose-1-phosphate adenylyltransferase OS=Methylo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185756 ID=CN185756; Name=CN185756; organism=Citrus sinensis; type=EST; length=795bp
GAGGTTTTTTTTTAGAATGAAAGATTTTATTTCTGCATAACTAGACCTTT
ACAGCATGTCCCTTTTTCCAGGTCCTATATTCCTCTCATAATTACATTAC
ACTGCCCGGAAATATACAGCTTATAGCAAAAAGATGGCCAAAGGTAAAGT
GGAAGCAGACTTGAGATTACGACATTCTCGAGCATAGAGGGGAAGGTACC
CGCAGCAGCGCAGCTTGGGATGAAACTGAGAAGACGACAGTTTAGATTAT
GGTTCCACTGGGAATCAAGGCATCCTTGATTATTGTGACAATCCCGCTCT
TGATGAAGTATCCATCTGTTTCCCTTGCTGCTTCTTGCACACTGTCACTG
TTGACGATCTTCACATTATCCCCAATTCGAGCATTTTTGTCAATTATTGC
TCTCTTGATGTGAGAATTCTTGCCAATACCAATTGGAACACTACCCTTTG
CAGCCAAAAACCTCCTGTCCGCGTCTGTCTCATAATAATCTGCTCCCATA
AGTAAAGTATCTTCGATAATTGCACCTTCTGATATGCAAGATCGAAGCCC
AACAACAGAATGGTGAATTTTGCAATTCTTAATCACACAGCCTTCACCAA
TTACACTATCAGTGACATCAGCATCAAGCATCTTAGAAGGAGGTAGATAT
CTAGGCTGTGTATAAATTGGAGCAGAACGGTCATAGAAGCTGAAATCCGG
AATTGGCTTTTTGGTGATCCCCAGATTCGCATTGTAGAAAGCCTCAATTG
TTCCAATGTCTTCCCAGTAGCCATCATATAAATATGCTTGCACTC
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