CN185756

Overview
NameCN185756
Unique NameCN185756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_LACLM (Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.313e-13
Identity = 51/161 (31.68%), Postives = 78/161 (48.45%), Query Frame = -3
Query:  338 VQAYLYDGYWEDIGTIEAFY---------NANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 793
            V AY + GYW+D+GTI++ +         N  L IT K    +S  D SAP +   +         + V ++++G+GC +    IH S++     + EG  IED+ +M   +                   IG+N  IK AII +NA+IGDNV+I+  D V
Sbjct:  233 VFAYRFKGYWKDVGTIDSLHQSSMEFLDLNNELNITDKSWRIYSHNDISAPQFITEK---------SKVKNALVGDGCYVDGTVIH-SILSQNVHVQEGTTIEDSFIMSGTF-------------------IGENVTIKNAIIGENAKIGDNVEIIGEDEV 364          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_ANADE (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.313e-13
Identity = 52/181 (28.73%), Postives = 87/181 (48.07%), Query Frame = -3
Query:  254 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD--------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 772
            GYW D+G+I+A++ AN+ +     P FS Y+   PI+T     PP+K +  +         TDS+I EGC+I    +HHS++  +  ++  A +E++++     +E               + IG++  I+RAIIDK+  I  +  I               +  +SGIV I K   I +G
Sbjct:  256 GYWRDVGSIDAYFQANMDLVAVD-PVFSLYNDEWPIFTVQYNYPPAKFVFNNERDNRIGRATDSLISEGCIISGAHVHHSILSPKVRVNSYATVEESIV-----FEN--------------VNIGRHCRIRRAIIDKHVDIPAHTTI----GFDHEKDRKHFHVTESGIVIIPKGMRIEAG 412          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_LACLA (Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. lactis GN=glgC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 49/161 (30.43%), Postives = 80/161 (49.69%), Query Frame = -3
Query:  338 VQAYLYDGYWEDIGTIEAFY---------NANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 793
            V AY + GYW+D+GTI++ +         N  L IT K    +S  D SAP +   +         ++V ++++G+GC +    +H S++     + EG +IED+ +M   +                   IG+N  IK AII +NA+IGDNV+I+  + V
Sbjct:  233 VFAYRFKGYWKDVGTIDSLHQSSMEFLDLNNELNITDKSWRIYSHNDISAPQFITEK---------SNVKNALVGDGCYVDGTVLH-SILSQNVHVQEGTVIEDSFIMSGTF-------------------IGENVTIKNAIIGENAKIGDNVEIIGENEV 364          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_BIFLO (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium longum GN=glgC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 50/181 (27.62%), Postives = 88/181 (48.62%), Query Frame = -3
Query:  245 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA------DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            YW D+GTI+ FY+A++ +    +P+F+ Y++  PIYT    LPP+K + A        TDS++  G ++   ++HHSV+     I   A I D++L                      + I + + + +AI+DKN  + +N   V  D+  + AR   G+ +    +T+     +P  TI+
Sbjct:  261 YWRDVGTIKQFYDAHMDLIAY-VPEFNLYNQDWPIYTMSGNLPPAKFVHAGRDRLGHATDSIVSPGVIVSGGEVHHSVLSPNVRIHSWAQIVDSVLFDG-------------------VVINRRARVYKAILDKNVVLTEN-STVGIDTEHDLAR---GFTVTPDGITV-----VPKNTIV 412          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_BIFLD (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium longum (strain DJO10A) GN=glgC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 50/181 (27.62%), Postives = 88/181 (48.62%), Query Frame = -3
Query:  245 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA------DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            YW D+GTI+ FY+A++ +    +P+F+ Y++  PIYT    LPP+K + A        TDS++  G ++   ++HHSV+     I   A I D++L                      + I + + + +AI+DKN  + +N   V  D+  + AR   G+ +    +T+     +P  TI+
Sbjct:  261 YWRDVGTIKQFYDAHMDLIAY-VPEFNLYNQDWPIYTMSGNLPPAKFVHAGRDRLGHATDSIVSPGVIVSGGEVHHSVLSPNVRIHSWAQIVDSVLFDG-------------------VVINRRARVYKAILDKNVVLTEN-STVGIDTEHDLAR---GFTVTPDGITV-----VPKNTIV 412          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBPA (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio parahaemolyticus GN=glgC1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 51/174 (29.31%), Postives = 88/174 (50.57%), Query Frame = -3
Query:  263 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 769
            YW D+GTI+A++ A++ + +K  P FS Y+R  P++T    LPP+   D+D     + DS++  G  ++  +I  SV+G RS I+    I + +L+G                    + IG+   ++R I+DK+A I    +I    ++QE  +    +  + GIV I K A +
Sbjct:  254 YWRDVGTIDAYWQAHMDLLEKDAP-FSLYNRKWPLHTYYPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISECILLG-------------------DVKIGEGCVLRRVIVDKDADIAPGTQI--GVNLQEDKKHF--HVSEEGIVVIPKGARV 403          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_THENN (Glucose-1-phosphate adenylyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 49/183 (26.78%), Postives = 97/183 (53.01%), Query Frame = -3
Query:  245 AYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII-KDALIPSGTII 787
            A+ +DGYW D+GTI +++ ANL +   P+P F+ YD +   +T    +PP+ +  +A  + S+I EG  +   ++ +SV+     I +G +++++++M                       IG+N +++  I+ +N +IG+NVK+     V E A+      I +G++T++  ++ IP   +I
Sbjct:  235 AFRFDGYWRDVGTIRSYWEANLELV-LPVPPFNLYDPNWRFFTHSEEMPPAYVAPEARTSTSLISEGAEVYG-EVTNSVIFQGVRIGKGTVVKNSVIM-------------------TRTEIGENCYLENVIVAENVKIGNNVKM----GVGEDAKSKLDPKIYTGLLTVVGMNSTIPDDVVI 392          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_LACLS (Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 51/161 (31.68%), Postives = 77/161 (47.83%), Query Frame = -3
Query:  338 VQAYLYDGYWEDIGTIEAFY---------NANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 793
            V AY + GYW+D+GTI++ +         N  L IT K    +S  D SAP +   +           V ++++G+GC +    IH S++     + EG  IED+ +M   +                   IG+N  IK AII +NA+IGDNV+I+  D V
Sbjct:  233 VFAYRFKGYWKDVGTIDSLHQSSMEFLDLNNELNITDKSWRIYSHNDISAPQFITEKL---------KVKNALVGDGCYVDGTVIH-SILSQNIHVQEGTTIEDSFIMSGTF-------------------IGENVTIKNAIIGENAKIGDNVEIIGEDEV 364          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_CORJK (Glucose-1-phosphate adenylyltransferase OS=Corynebacterium jeikeium (strain K411) GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 54/193 (27.98%), Postives = 95/193 (49.22%), Query Frame = -3
Query:  263 QAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYT-QPRYLPPSKMLDADVT-DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFI-KSGIVTIIKDALI 790
            +AY+YD              GYW D+GT++AFY A++ +     P F+ Y++  PI+T +   LPP+K +   +   S++  GC+I    + +SV+     + EGA +E  ++M                     + IG+ + ++ AIIDKN ++    +I+  D     AR+ D + I K G+V I K+ ++
Sbjct:  238 EAYVYDFSNNYVPGETERDKGYWRDVGTVDAFYEAHMDLISVH-PVFNLYNQQWPIHTAETGNLPPAKFVKGGIAQSSMVSAGCIISAGTVRNSVLSENVVVEEGASVEGCVIMPG-------------------VRIGRGAVVRHAIIDKNVQVSAG-EIIGVD----RARDQDRFTISKGGVVCIGKNVVV 405          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_BIFLI (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 50/181 (27.62%), Postives = 88/181 (48.62%), Query Frame = -3
Query:  245 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA------DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 769
            YW D+GTI+ FY+A++ +    +P+F+ Y++  PIYT    LPP+K + A        TDS++  G ++   ++HHSV+     I   A I D++L                      + I + + + +AI+DKN  + +N   V  D+  + AR   G+ +    +T+     +P  TI+
Sbjct:  261 YWRDVGTIKQFYDAHMDLIAY-VPEFNLYNQDWPIYTMSGNLPPAKFVHAGRDRLGHATDSIVSPGVIVSGGEVHHSVLSPNVRIHSWAQIVDSVLFDG-------------------VIINRRARVYKAILDKNVVLTEN-STVGIDTEHDLAR---GFTVTPDGITV-----VPKNTIV 412          
The following BLAST results are available for this feature:
BLAST of CN185756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
GLGC_LACLM1.313e-1331.68Glucose-1-phosphate adenylyltransferase OS=Lactoco... [more]
GLGC_ANADE1.313e-1328.73Glucose-1-phosphate adenylyltransferase OS=Anaerom... [more]
GLGC_LACLA1.714e-1330.43Glucose-1-phosphate adenylyltransferase OS=Lactoco... [more]
GLGC_BIFLO1.714e-1327.62Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_BIFLD1.714e-1327.62Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC1_VIBPA1.714e-1329.31Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_THENN2.239e-1326.78Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_LACLS2.239e-1331.68Glucose-1-phosphate adenylyltransferase OS=Lactoco... [more]
GLGC_CORJK2.239e-1327.98Glucose-1-phosphate adenylyltransferase OS=Coryneb... [more]
GLGC_BIFLI2.239e-1327.62Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185756 ID=CN185756; Name=CN185756; organism=Citrus sinensis; type=EST; length=795bp
GAGGTTTTTTTTTAGAATGAAAGATTTTATTTCTGCATAACTAGACCTTT
ACAGCATGTCCCTTTTTCCAGGTCCTATATTCCTCTCATAATTACATTAC
ACTGCCCGGAAATATACAGCTTATAGCAAAAAGATGGCCAAAGGTAAAGT
GGAAGCAGACTTGAGATTACGACATTCTCGAGCATAGAGGGGAAGGTACC
CGCAGCAGCGCAGCTTGGGATGAAACTGAGAAGACGACAGTTTAGATTAT
GGTTCCACTGGGAATCAAGGCATCCTTGATTATTGTGACAATCCCGCTCT
TGATGAAGTATCCATCTGTTTCCCTTGCTGCTTCTTGCACACTGTCACTG
TTGACGATCTTCACATTATCCCCAATTCGAGCATTTTTGTCAATTATTGC
TCTCTTGATGTGAGAATTCTTGCCAATACCAATTGGAACACTACCCTTTG
CAGCCAAAAACCTCCTGTCCGCGTCTGTCTCATAATAATCTGCTCCCATA
AGTAAAGTATCTTCGATAATTGCACCTTCTGATATGCAAGATCGAAGCCC
AACAACAGAATGGTGAATTTTGCAATTCTTAATCACACAGCCTTCACCAA
TTACACTATCAGTGACATCAGCATCAAGCATCTTAGAAGGAGGTAGATAT
CTAGGCTGTGTATAAATTGGAGCAGAACGGTCATAGAAGCTGAAATCCGG
AATTGGCTTTTTGGTGATCCCCAGATTCGCATTGTAGAAAGCCTCAATTG
TTCCAATGTCTTCCCAGTAGCCATCATATAAATATGCTTGCACTC
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