CN185756

Overview
NameCN185756
Unique NameCN185756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3060 contig Csv1_Contig3060:140..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBVY (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio vulnificus (strain YJ016) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 50/175 (28.57%), Postives = 86/175 (49.14%), Query Frame = -3
Query:  263 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIKDALI 769
            YW D+GTI+A++ A++ + K   P FS Y+R  P++T    LPP+   D+D     + DS++  G  ++  +I  SV+G RS I+    I +++L+G                    + +G+   ++R I+DK+  I    +I VN    ++    +D      GIV I K A +
Sbjct:  254 YWRDVGTIDAYWQAHMDLLKTDAP-FSLYNRKWPLHTYQPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISESILLG-------------------DVKVGEGCVLRRVIVDKDVDIAPGTQIGVNLQEDKKVFHVSD-----DGIVVIPKGARV 403          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_PROAC (Glucose-1-phosphate adenylyltransferase OS=Propionibacterium acnes GN=glgC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 45/165 (27.27%), Postives = 85/165 (51.52%), Query Frame = -3
Query:  278 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSK-MLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII 769
            YW D+GTI+A+++A++ +     P+F+ Y+   PI+T     P +K ++     D+++  GC+I    I+ +V+G R+ I   A ++++++M                     + IG N+ + RAI+DKN  + D  + V  D   + AR   G+ +  G VT++
Sbjct:  260 YWRDVGTIDAYHDAHMDLVSVE-PEFNLYNPDWPIWTMQEQAPGAKFVMRGSCDDTLVSAGCIISGTDIYRTVLGPRARIERWARVDESIVMN-------------------NVAIGSNATVHRAILDKNVIVPDGAQ-VGVDHDHDRAR---GFTVSPGGVTVV 400          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_ANAD2 (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 51/181 (28.18%), Postives = 89/181 (49.17%), Query Frame = -3
Query:  254 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML---DAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 772
            GYW D+G+I+A++ AN+ +     P FS Y+   PI+T     PP+K +   ++D      TDS++ EGC+I    +HHS++  +  ++  A ++++++     +E               + IG++  I+RAIIDK+  I  +  I               +  +SGIV I K   I +G
Sbjct:  256 GYWRDVGSIDAYFQANMDLVAVD-PVFSLYNDEWPIFTVQYNYPPAKFVFNNESDHRVGRATDSLVSEGCIISGSHVHHSILSPKVRVNSYATVDESIV-----FEN--------------VNIGRHCRIRRAIIDKHVDIPAHTTI----GYDHEKDRKHFHVTESGIVIIPKGMRIEAG 412          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBVU (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio vulnificus GN=glgC1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 50/175 (28.57%), Postives = 86/175 (49.14%), Query Frame = -3
Query:  263 YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGYFIKSGIVTIIKDALI 769
            YW D+GTI+A++ A++ + K   P FS Y+R  P++T    LPP+   D+D     + DS++  G  ++  +I  SV+G RS I+    I +++L+G                    + +G+   ++R I+DK+  I    +I VN    ++    +D      GIV I K A +
Sbjct:  254 YWRDVGTIDAYWQAHMDLLKTDAP-FSLYNRKWPLHTYQPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISESILLG-------------------DVKVGEGCVLRRVIVDKDVDIAPGTQIGVNLQEDKKIFHVSD-----DGIVVIPKGARV 403          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_RHOE4 (Glucose-1-phosphate adenylyltransferase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=glgC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13
Identity = 45/151 (29.80%), Postives = 78/151 (51.66%), Query Frame = -3
Query:  323 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT-DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 772
            GYW D+GT++AFY+A++ +     P F+ Y+R  PI      L P+K +   +  +SV+G G ++    + +SV+     I +GA +E ++LM                     + IGK + ++RAI+DKN  +GD  +I+  D  ++  R
Sbjct:  258 GYWRDVGTLDAFYDAHMDLVSVH-PIFNLYNRRWPIRGATENLAPAKFVKGGLAQESVVGAGSILSAATVRNSVLSSNVMIEDGATVEGSVLMPG-------------------VRIGKGAVVRRAILDKNVVVGDG-EIIGVDLERDRER 387          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_STRA5 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype V GN=glgC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = -3
Query:  335 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQ 793
            V  Y +DGYW+D+GTIE+ + AN+    +     S  DRS  IY++    PP+ M  DA+V DS++ +GC +    + HS++     +   AII+D+ +M                       IG+ + I RAII ++A IGD V I  S  V+
Sbjct:  233 VYTYNFDGYWKDVGTIESLWEANMEYIGEDNKLHS-RDRSWKIYSKNLIAPPNFMTEDANVKDSLVVDGCFVAG-NVEHSILSTNVQVKPNAIIKDSFVMSG-------------------ATIGEGAKINRAIIGEDAVIGDGVVIDGSKEVE 365          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_STRA3 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype III GN=glgC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = -3
Query:  335 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQ 793
            V  Y +DGYW+D+GTIE+ + AN+    +     S  DRS  IY++    PP+ M  DA+V DS++ +GC +    + HS++     +   AII+D+ +M                       IG+ + I RAII ++A IGD V I  S  V+
Sbjct:  233 VYTYNFDGYWKDVGTIESLWEANMEYIGEDNKLHS-RDRSWKIYSKNLIAPPNFMTEDANVKDSLVVDGCFVAG-NVEHSILSTNVQVKPNAIIKDSFVMSG-------------------ATIGEGAKINRAIIGEDAVIGDGVVIDGSKEVE 365          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_STRA1 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype Ia GN=glgC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = -3
Query:  335 VQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQ 793
            V  Y +DGYW+D+GTIE+ + AN+    +     S  DRS  IY++    PP+ M  DA+V DS++ +GC +    + HS++     +   AII+D+ +M                       IG+ + I RAII ++A IGD V I  S  V+
Sbjct:  233 VYTYNFDGYWKDVGTIESLWEANMEYIGEDNKLHS-RDRSWKIYSKNLIAPPNFMTEDANVKDSLVVDGCFVAG-NVEHSILSTNVQVKPNAIIKDSFVMSG-------------------ATIGEGAKINRAIIGEDAVIGDGVVIDGSKEVE 365          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_RHOBA (Glucose-1-phosphate adenylyltransferase OS=Rhodopirellula baltica GN=glgC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 52/182 (28.57%), Postives = 83/182 (45.60%), Query Frame = -3
Query:  257 DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML---------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPS 775
            D YW D+GT+EA+Y AN+ +     P  + YDR  PI +    LPP K +           +  DS++ +G +I    +  SV+G    I+  A +ED++L                      + +G++S I+RAIIDK  +I    +I    ++  A   T      SG+V I +  +I S
Sbjct:  272 DAYWRDVGTLEAYYEANMDLVGVD-PQLNLYDRQWPIRSFQPQLPPPKFVFGSEGRSSRRGEALDSIVCQGAIISGGCVRRSVIGTGCRINSYAQVEDSILFD-------------------DVNVGRHSRIRRAIIDKGVQIPPETEIGYDLALDRARGLT---VTDSGLVVIARGEMIAS 430          
BLAST of CN185756 vs. ExPASy Swiss-Prot
Match: GLGC_ANASK (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter sp. (strain K) GN=glgC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 50/181 (27.62%), Postives = 87/181 (48.07%), Query Frame = -3
Query:  254 GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD--------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 772
            GYW D+G+I+A++ AN+ +     P FS Y+   PI+T     PP+K +  +         TDS++ EGC+I    +HHS++  +  ++  A ++++++     +E               + IG++  I+RAIIDK+  I  +  I               +  +SGIV I K   I +G
Sbjct:  256 GYWRDVGSIDAYFQANMDLVAVD-PVFSLYNDEWPIFTVQYNYPPAKFVFNNEHDHRVGRATDSLVSEGCIISGSHVHHSILSPKVRVNSYATVDESIV-----FEN--------------VNIGRHCRIRRAIIDKHVDIPAHTTI----GYDHEKDRKHFHVTESGIVIIPKGMRIEAG 412          
The following BLAST results are available for this feature:
BLAST of CN185756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
GLGC1_VIBVY2.239e-1328.57Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_PROAC2.924e-1327.27Glucose-1-phosphate adenylyltransferase OS=Propion... [more]
GLGC_ANAD22.924e-1328.18Glucose-1-phosphate adenylyltransferase OS=Anaerom... [more]
GLGC1_VIBVU2.924e-1328.57Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_RHOE43.819e-1329.80Glucose-1-phosphate adenylyltransferase OS=Rhodoco... [more]
GLGC_STRA54.988e-1333.12Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRA34.988e-1333.12Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRA14.988e-1333.12Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_RHOBA4.988e-1328.57Glucose-1-phosphate adenylyltransferase OS=Rhodopi... [more]
GLGC_ANASK4.988e-1327.62Glucose-1-phosphate adenylyltransferase OS=Anaerom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001N05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185756 ID=CN185756; Name=CN185756; organism=Citrus sinensis; type=EST; length=795bp
GAGGTTTTTTTTTAGAATGAAAGATTTTATTTCTGCATAACTAGACCTTT
ACAGCATGTCCCTTTTTCCAGGTCCTATATTCCTCTCATAATTACATTAC
ACTGCCCGGAAATATACAGCTTATAGCAAAAAGATGGCCAAAGGTAAAGT
GGAAGCAGACTTGAGATTACGACATTCTCGAGCATAGAGGGGAAGGTACC
CGCAGCAGCGCAGCTTGGGATGAAACTGAGAAGACGACAGTTTAGATTAT
GGTTCCACTGGGAATCAAGGCATCCTTGATTATTGTGACAATCCCGCTCT
TGATGAAGTATCCATCTGTTTCCCTTGCTGCTTCTTGCACACTGTCACTG
TTGACGATCTTCACATTATCCCCAATTCGAGCATTTTTGTCAATTATTGC
TCTCTTGATGTGAGAATTCTTGCCAATACCAATTGGAACACTACCCTTTG
CAGCCAAAAACCTCCTGTCCGCGTCTGTCTCATAATAATCTGCTCCCATA
AGTAAAGTATCTTCGATAATTGCACCTTCTGATATGCAAGATCGAAGCCC
AACAACAGAATGGTGAATTTTGCAATTCTTAATCACACAGCCTTCACCAA
TTACACTATCAGTGACATCAGCATCAAGCATCTTAGAAGGAGGTAGATAT
CTAGGCTGTGTATAAATTGGAGCAGAACGGTCATAGAAGCTGAAATCCGG
AATTGGCTTTTTGGTGATCCCCAGATTCGCATTGTAGAAAGCCTCAATTG
TTCCAATGTCTTCCCAGTAGCCATCATATAAATATGCTTGCACTC
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