CN185745

Overview
NameCN185745
Unique NameCN185745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6751 contig Csv1_Contig6751:507..1135. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185745 vs. ExPASy Swiss-Prot
Match: ILVG_ECOLI (Acetolactate synthase isozyme 2 large subunit OS=Escherichia coli (strain K12) GN=ilvG PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.164e-26
Identity = 61/136 (44.85%), Postives = 88/136 (64.71%), Query Frame = -1
Query:  222 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 629
            A P+  +V I GDGSF+MNVQEL T+K ++LP+KI+LL+NQ LGMV QW+  F++   + T L D        P+ L  A A GI G  +TRK  + AA+ TML++ GPYLL V +   E+V P++P G +  +++
Sbjct:  416 ARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLFFQERYSETTLTDN-------PDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEML 544          
BLAST of CN185745 vs. ExPASy Swiss-Prot
Match: ILVB_SCHPO (Acetolactate synthase, mitochondrial OS=Schizosaccharomyces pombe GN=ilv1 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.090e-24
Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = -1
Query:  222 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 629
            A P  I++DIDGD SF M   ELAT++   +P+KIL+LNN+  GMV QW++ FY+   +HT+  +        PN +K A+A GI   +V ++ DL   ++  L T GP L++V+V  +EHV P +P G A    I
Sbjct:  536 AAPKDIVIDIDGDASFSMTGMELATVRQFDIPVKILILNNEEQGMVTQWQNLFYEKRYSHTHQKN--------PNFVKLADAMGIKALRVEKREDLAKKMKEFLSTKGPVLMEVLVAQKEHVYPFVPGGKALHQFI 663          
BLAST of CN185745 vs. ExPASy Swiss-Prot
Match: ILVB_CYACA (Acetolactate synthase large subunit OS=Cyanidium caldarium GN=ilvB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.061e-22
Identity = 55/129 (42.64%), Postives = 77/129 (59.69%), Query Frame = -1
Query:  243 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 629
            ANP+ +I+ I GD SF MN+QEL TI   +L IKI ++NNQ  GMV QW+  FY    AH+ +          P+ ++ A + GI G +VT   DL++ I+ ++ TPGP L+D IV   E+  PMI  G
Sbjct:  445 ANPNDLIICITGDASFQMNLQELGTIAQYELDIKIFIINNQWQGMVRQWQQAFYDQRYAHSNMAKGQ------PDFVQLANSYGIRGIRVTTSKDLKSKIERIISTPGPLLIDCIVATSENCYPMIAPG 567          
BLAST of CN185745 vs. ExPASy Swiss-Prot
Match: ILVB_YEAST (Acetolactate synthase catalytic subunit, mitochondrial OS=Saccharomyces cerevisiae GN=ILV2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.127e-21
Identity = 51/136 (37.50%), Postives = 82/136 (60.29%), Query Frame = -1
Query:  222 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 629
            A P+++++DIDGD SF M + EL++      P+KIL+LNN+  GMV QW+  FY+   +HT+        ++ P+ +K AEA G+ G +V ++ +L A ++  + T GP LL+V V  +  VLPM+  G    + I
Sbjct:  538 AKPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEFI 665          
BLAST of CN185745 vs. ExPASy Swiss-Prot
Match: ILVB_PORYE (Acetolactate synthase large subunit OS=Porphyra yezoensis GN=ilvB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.473e-21
Identity = 52/129 (40.31%), Postives = 78/129 (60.47%), Query Frame = -1
Query:  243 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 629
            A+P+ +++ I GD SF MN+QEL TI   +LP+KI+++NN+  GMV QW+  FY    +H      SR +E  P+  K AEA GI    +  + ++++A+Q  +D PGP LLD  V   E+  PM+  G
Sbjct:  443 AHPNDVVICISGDSSFQMNMQELGTIAQYQLPVKIIIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPDFQKLAEAFGIKAFTINNRQNMQSALQVAIDYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CN185745 vs. ExPASy Swiss-Prot
Match: ILVB_PORUM (Acetolactate synthase large subunit OS=Porphyra umbilicalis GN=ilvB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = -1
Query:  243 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 629
            A+P+ +++ + GD SF MN+QEL TI   KLPIKI+++NN+  GMV QW+  FY    +H      SR +E  PN  K AEA GI    V  + ++ ++++  +  PGP LLD  V   E+  PM+  G
Sbjct:  443 AHPNELVICVSGDSSFQMNMQELGTIAQYKLPIKIVIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPNFQKLAEAFGIKAFTVNNRQNMESSLKDAMKYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CN185745 vs. ExPASy Swiss-Prot
Match: ILVB_PORPU (Acetolactate synthase large subunit OS=Porphyra purpurea GN=ilvB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = -1
Query:  243 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 629
            A+P+ +++ + GD SF MN+QEL TI   KLPIKI+++NN+  GMV QW+  FY    +H      SR +E  PN  K AEA GI    V  + ++ ++++  +  PGP LLD  V   E+  PM+  G
Sbjct:  443 AHPNELVICVSGDSSFQMNMQELGTIAQYKLPIKIVIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPNFQKLAEAFGIKAFTVNNRQNMESSLKDAMKYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CN185745 vs. ExPASy Swiss-Prot
Match: ILVB_METJA (Probable acetolactate synthase large subunit OS=Methanocaldococcus jannaschii GN=ilvB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 45/136 (33.09%), Postives = 80/136 (58.82%), Query Frame = -1
Query:  222 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVI 629
            A P A ++ I GDG F+MN QELATI    +P+ I + +N+ LGMV QW++ +Y   ++  +LG+        P+ +K AE+ G+   ++    +++  ++  + +  PYLLD+++   E  LPM+P GG   +++
Sbjct:  435 AKPYANVISITGDGGFLMNSQELATISEYDIPVVICIFDNRTLGMVYQWQNLYYGQRQSEVHLGES-------PDFVKLAESYGVKADRIISPDEIKEKLKEAILSNEPYLLDIVIDPAE-ALPMVPPGGRLTNIV 562          
BLAST of CN185745 vs. ExPASy Swiss-Prot
Match: ILVB_GUITH (Acetolactate synthase large subunit OS=Guillardia theta GN=ilvB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.524e-18
Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = -1
Query:  243 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSG 629
            A+P+  ++ I GD SF MN+QEL T+    LPIKI ++NN+  GMV QW+  FY    +H      S   +  PN  K AEA G+   ++  + DL+  I+  LD  GP L+D+ V   E+  PM+  G
Sbjct:  442 AHPNEQVICISGDASFQMNIQELGTVSQYGLPIKIFIINNKWQGMVRQWQQAFYGERYSH------SNMEKGAPNFTKVAEAFGLRSLKIKSRNDLKLRIKEALDYDGPILVDIQVIADENCYPMVAPG 564          
BLAST of CN185745 vs. ExPASy Swiss-Prot
Match: ILVB_ECOLI (Acetolactate synthase isozyme 1 large subunit OS=Escherichia coli (strain K12) GN=ilvB PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = -1
Query:  216 ANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKAN-RAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITE 629
            ANPD  ++   GDGS +MN+QE+AT    +L +KI+L+NN+ LG+V Q +  FY+    A TY G          N ++ A   G+    +  +AD +A++Q +++ PGP L+ V +  +E V PM+P G A  +++ E
Sbjct:  432 ANPDRKVLCFSGDGSLMMNIQEMATASENQLDVKIILMNNEALGLVHQQQSLFYEQGVFAATYPGK--------INFMQIAAGFGLETCDLNNEADPQASLQEIINRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE 562          
The following BLAST results are available for this feature:
BLAST of CN185745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
ILVG_ECOLI1.164e-2644.85Acetolactate synthase isozyme 2 large subunit OS=E... [more]
ILVB_SCHPO1.090e-2441.18Acetolactate synthase, mitochondrial OS=Schizosacc... [more]
ILVB_CYACA5.061e-2242.64Acetolactate synthase large subunit OS=Cyanidium c... [more]
ILVB_YEAST1.127e-2137.50Acetolactate synthase catalytic subunit, mitochond... [more]
ILVB_PORYE1.473e-2140.31Acetolactate synthase large subunit OS=Porphyra ye... [more]
ILVB_PORUM9.545e-2140.31Acetolactate synthase large subunit OS=Porphyra um... [more]
ILVB_PORPU9.545e-2140.31Acetolactate synthase large subunit OS=Porphyra pu... [more]
ILVB_METJA1.167e-1833.09Probable acetolactate synthase large subunit OS=Me... [more]
ILVB_GUITH1.524e-1838.76Acetolactate synthase large subunit OS=Guillardia ... [more]
ILVB_ECOLI1.990e-1835.97Acetolactate synthase isozyme 1 large subunit OS=E... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001M23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185745 ID=CN185745; Name=CN185745; organism=Citrus sinensis; type=EST; length=629bp
TTTTCAATACACAAACAAATTATAATAACATTGTAACTCATAGAGTTTGT
TTGTTAAACAAACACTAGTTCCATTAAAACTGACACCTGAACTAAAAACA
CTGCCACACACTCATAGGTAAGTTAAGCCTGCAACTCAAAAGGAACATAA
ATACATAGCCAAGAAGGCATCTATGCTGCTTCAGCTTGTCGTTAATACTG
CGTTCTTCCATCACCTTCAGTGATCACATCTTTAAAAGCTCCACCACTGG
GGATCATAGGCAGGACATGCTCTTGATGAGGAACGATGACGTCCAGAAGG
TATGGTCCAGGAGTGTCCAACATAGTCTGAATTGCGGCTCTCAGATCTGC
CTTCCTTGTTACTTGTGCTCCAGGTATTCCACAGGCTTCTGCAAACTTCA
ACATATTCGGAAATATTTCAGACTCTCTTGATGGATCTCCCAAATACGTG
TGAGCCCTATTTGCCTTGTAAAACCGATCCTCCCATTGCATCACCATGCC
CAAGTGCTGATTATTCAACAGCAATATCTTGATGGGGAGTTTCTCTACCT
TAATAGTCGCCAACTCCTGGACGTTCATGATGAAACTCCCATCACCATCA
ATATCTACAATGATGGCATCAGGATTTGC
back to top