CN185740

Overview
NameCN185740
Unique NameCN185740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185740_ssr45 microsatellite CN185740_ssr45:45..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13665 contig Csv1_Contig13665:5..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185740 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  133 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRHWYIQSTCATSGEGLYEGLDWLS 612
            KK+  I+ VGLD AGK+T+L  LK     T  PT     + +   +I F  +D+GG +  R LW  Y  N+ G++F+VDS D  R  E+R  L  +L+  +L    +L+ +NK D+  A++   +    G+  L            QR   +      +  G  +G  WLS
Sbjct:   18 KKKATIVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNLRSDQRPLEVFPCSVINRFGYTDGFKWLS 188          
BLAST of CN185740 vs. ExPASy Swiss-Prot
Match: CIN4_YEAST (GTP-binding protein CIN4 OS=Saccharomyces cerevisiae GN=CIN4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 1
Query:  136 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAMNAAEITDKLGLH 528
            KE+R L++GLD +GK+TI+ KL   +       +PT+GF + ++  K+++ ++WD+GGQ  +RP W +YF  TQ +I+ +D +   R  E   EL  ++N DE R   +  ++V  NK DL        + DK  LH
Sbjct:   15 KEIRCLILGLDNSGKSTIVNKLLPKDEQNNDGIMPTVGFQIHSLMIKDVTISLWDIGGQRTLRPFWDNYFDKTQAMIWCIDVSLSMRFDETLQELKELINRDENRIGYECAVIVVLNKIDL--------VEDKSELH 143          
BLAST of CN185740 vs. ExPASy Swiss-Prot
Match: ARL10_MOUSE (ADP-ribosylation factor-like protein 10 OS=Mus musculus GN=Arl10 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 54/156 (34.62%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  136 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-LHSLRQRH-WYIQSTCATSGEGLYE 594
            ++  +L++GLD +GK+T L  L     +   +PT GFN   +  KN    + ++G    +R  W+ +      L+F+VDS DR R+  AR EL ++L+ D   D  +++ ANKQDL  AMN  E+  +LG L S  QR  + + ++ A +G G  E
Sbjct:   75 EQREVLVLGLDGSGKSTFLRMLAGKPPVEGHVPTWGFNSVRLPTKNFEVDLLEIGDSQNLRFYWKEFVNEVDVLVFMVDSTDRLRLPWARQELQKLLDRDP--DLPVVIVANKQDLSGAMNMVELQQELGLLASYNQREVFLLAASIAPAGSGFGE 228          
BLAST of CN185740 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 51/141 (36.17%), Postives = 82/141 (58.16%), Query Frame = 1
Query:   97 LTFTK-LFSRLFAKKEMRILMVGLDAAGKTTILYKLK--LGEIVTT---------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDL 480
            ++F K LF  L  KK   ++++G++  GKTT+LY +     E +TT         IPT GFNVE++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E++ E   + N+  L++   L+ ANKQDL
Sbjct:    5 ISFIKNLFGFLTIKK---VMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDL 142          
BLAST of CN185740 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  133 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 525
            +K  +IL++GLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++  + +    L+VFANKQDL  A +  +I + L L
Sbjct:   16 EKNKQILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALAL 145          
BLAST of CN185740 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 1
Query:  133 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLN 426
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E++ EL  +L+
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
BLAST of CN185740 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = 1
Query:  103 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDL 480
            F      LF K    IL +G+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E R+    +L+ +  + A ++V  NK DL
Sbjct:   24 FQNFVKSLFGKPSS-ILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSLE--KRAPVVVLMNKIDL 146          
The following BLAST results are available for this feature:
BLAST of CN185740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
SAR1_GIALA1.989e-1730.99GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
CIN4_YEAST2.598e-1735.77GTP-binding protein CIN4 OS=Saccharomyces cerevisi... [more]
ARL10_MOUSE3.393e-1734.62ADP-ribosylation factor-like protein 10 OS=Mus mus... [more]
ARLX_DICDI2.872e-1636.17ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
ARL9_HUMAN2.432e-1535.61ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
SAR1_TOBAC1.927e-1236.73GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_ENCCU1.927e-1234.92Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185740 ID=CN185740; Name=CN185740; organism=Citrus sinensis; type=EST; length=686bp
AGGTAAGCTAATAAGCTTCGTCCTCCACACCCCCCCCCCCTCCCCTCTCT
CTCTCGCGTTCTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCTGA
CTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAATT
CTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAGCT
CAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAATGTGG
AGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTGGC
CAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGG
TCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAA
GGGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTG
TTGCTTGTATTTGCTAACAAACAGGATCTTCCAAATGCAATGAATGCTGC
TGAGATTACTGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGT
ACATCCAGAGCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTG
GATTGGCTCTCCAACAACATCGCTAACAAGGCCTGAAGCTGTTAAGATCT
TTTTGCGGACTGGCAATTCTGGATGCAGGGGTGAAT
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