DC900011

Overview
NameDC900011
Unique NameDC900011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: Y4312_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana GN=At4g31250 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.576e-14
Identity = 57/177 (32.20%), Postives = 93/177 (52.54%), Query Frame = 2
Query:  134 HRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFG---DNNLVGWVKQHAKLK-ISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEI--QAGSGLDS-QSTIATDEGG 643
            H  +KSSNVLLD NFE  ++D+ +  +++   +   +        Y  PE+ Q  R S + DV+S G+++LE+LTGK P +    G   D+ L  WV+  A+ +  +DVFD E MK     E ++L+ L +   C D    +R  + + +   +E+   AG G +S +S+  T   G
Sbjct:  492 HGHLKSSNVLLDPNFEPLLTDYALVPVVNRDQSQQFMVA------YKAPEFTQQDRTSRRSDVWSLGILILEILTGKFPANYLRQGKGADDELAAWVESVARTEWTADVFDKE-MKAGKEHEAQMLKLLKIGLRCCDWDIEKRIELHEAVDRIEEVDRDAGGGQESVRSSYVTASDG 661          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.576e-14
Identity = 55/158 (34.81%), Postives = 90/158 (56.96%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDN--NLVGWVKQHAKLKIS-DVFDPELMK--EDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKE 586
            IIH +++S NVL+D+ F AR+++FG+ ++M        VS  A + GY  PE ++  +C+ + DVY++G++LLE+L GK+P  S   G+   +L   VK     + + +VFD E MK    P +E  L+  L +A  C       RP+M +V+   +E
Sbjct:  496 IIHGNIRSKNVLVDDFFFARLTEFGLDKIMVQAVADEIVSQ-AKSDGYKAPELHKMKKCNPRSDVYAFGILLLEILMGKKPGKSGRNGNEFVDLPSLVKAAVLEETTMEVFDLEAMKGIRSP-MEEGLVHALKLAMGCCAPVTTVRPSMEEVVKQLEE 651          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: DRKB_DICDI (Probable serine/threonine-protein kinase drkB OS=Dictyostelium discoideum GN=drkB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.122e-13
Identity = 53/158 (33.54%), Postives = 82/158 (51.90%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRP-TDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQ 592
            P I+HRD+KS N+L+DEN++ +V+DFG    +S ++   +  T  GTP +  PE  +S R + K DVYS+G++L E  T + P      F     VG           +   P   K  P   I+LL+       CL++ P +RPTM Q + + + I+
Sbjct:  508 PVILHRDLKSHNLLVDENWKVKVADFG----LSTIEQQGATMTACGTPCWTSPEVLRSQRYTEKADVYSFGIILWECATRQDPYFGIPPFQVIFAVG----------REGMRPPTPKYGPPKYIQLLKD------CLNENPSQRPTMEQCLEILESIE 645          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.499e-13
Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSA-DFGDNNLVGWV--KQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVM 571
            P I+ +++KS+N+LLD      +SD G+A  +   +  L+ +      GY  PE   S + S K D+YS+GVV+LELLTG++P DS     + +LV W   + H    ++ + DP L    P     L +   V + C+   P  RP M +V+
Sbjct:  538 PSIVDKNIKSANILLDSELNPHLSDSGLASFLPTANELLNQTD----EGYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALAKMVDPALKGLYP--VKSLSRFADVIALCVQPEPEFRPPMSEVV 684          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: YR826_MIMIV (Putative serine/threonine-protein kinase/receptor R826 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R826 PE=4 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 51/166 (30.72%), Postives = 85/166 (51.20%), Query Frame = 2
Query:   95 LVPNSARGI-------PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVM 571
            ++ N A+GI       P IIHRD+K SN+L+DEN+  +++DFG AR+        ++ T  GTP +  PE  ++     K DV+S+G+V+ E+LT K P   A+F              + I +   P++ ++ P    +L++       C   +  +RPTM  V+
Sbjct: 1500 ILVNIAKGISYLHSFDPPIIHRDIKPSNILIDENWNVKIADFGFARIKE----ENAIMTRCGTPCWTAPEIIRNDIYDEKVDVFSFGIVMWEVLTCKEPFIGANF----------MKITMDILEDVRPKIPQDCPEEFAKLMR------KCWHAKSTKRPTMDDVI 1645          

HSP 2 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 49/178 (27.53%), Postives = 86/178 (48.31%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFR--CSTKGDVYSYGVVLLELLTGKRPTDSADFGDNN---LVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQAGSGLDSQSTIATDEGGF 646
            I HRD+KS N+LLD  +  +VSDFG+ +  S + + ++    AGT  +  PE     R       DVYS+G+++ EL+T  +P     FG +     V  ++ + +  ISD    E+  E          ++ + ++C    P  RPT +++M     +   SG+   S+ +++   F
Sbjct:  905 ITHRDLKSLNLLLDIKWNVKVSDFGLTKFKSDVKS-INPEKFAGTIQWTAPEILSEDREVDYILSDVYSFGIIMWELITRDQPY----FGMSPAAIAVSVIRDNYRPVISDQLRSEVAPE----------YIELLTSCWHFDPTIRPTFLEIMTRLSNLMGDSGMTGMSSSSSNSSKF 1067          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 53/164 (32.32%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTD-SADFGDNNLVGWV--KQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVM-AMFKEIQAGS 601
            P ++H+++KSSN+LLD +   R+SD+G+++       +L         GY  PE       + K DVYS+GVV+LELLTG+ P D      + +LV W   + H    +S++ DP L    P     L +   + + C+   P  RP M +V+ A+ + +Q  S
Sbjct:  526 PSVMHKNIKSSNILLDADLNPRLSDYGLSKFYLRTSQNLG-------EGYNAPEARDPSAYTPKSDVYSFGVVMLELLTGRVPFDGEKPRPERSLVRWATPQLHDIDALSNIADPALHGLYP--PKSLSRFADIIALCVQVEPEFRPPMSEVVEALVRMVQRSS 680          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: SHKD_DICDI (Dual specificity protein kinase shkD OS=Dictyostelium discoideum GN=shkD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 49/172 (28.49%), Postives = 80/172 (46.51%), Query Frame = 2
Query:  104 NSARGIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELM--KEDPNIEIELLQHL-HVASACLDDRPWRRPTMIQVMAMFKEIQAGSGLD 610
            N   GI  I+H D+K++N+L+D N   +V+DFG +++    +         GTP ++ PE       + K DVYS+G++L E+LT + P                 ++  K  D+F   +   KE P I  + L  L H+   C D  P  RP+  +++    EI     +D
Sbjct:  388 NWLHGITRIVHNDLKTANLLVDINLRVKVTDFGFSQIKEGEE--FQDKAAKGTPLWMAPEVMMGNPYNEKADVYSFGIILWEILTKEAP-----------------YSHHKDYDIFFNAICNEKERPPIPADTLPSLRHLIQTCWDHNPQNRPSFSEILFRLNEILIDCAID 540          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: DRKA_DICDI (Probable serine/threonine-protein kinase drkA OS=Dictyostelium discoideum GN=drkA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.263e-13
Identity = 54/166 (32.53%), Postives = 82/166 (49.40%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRP-TDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQAGSGLDSQ 616
            P I+HRD+KS N+L+DEN++ +V+DFG    +S ++   +  T  GTP +  PE  +S R + K DVYS+G++L E  T + P      F     VG           +   P + +  P   I+LL        CL++ P  RPTM Q +   + I +    D Q
Sbjct:  491 PVILHRDLKSHNLLVDENWKVKVADFG----LSTIEQQGATMTACGTPCWTSPEVLRSQRYTEKADVYSFGIILWECATRQDPYFGIPPFQVIFAVG----------REGMRPPVPQNGPPKYIQLL------IDCLNENPSHRPTMEQCLERLESIDSSGYSDLQ 636          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: IRAK1_BOVIN (Interleukin-1 receptor-associated kinase 1 OS=Bos taurus GN=IRAK1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.262e-13
Identity = 61/192 (31.77%), Postives = 81/192 (42.19%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVS-------TLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRP----------------------------TDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQ 592
            P +IH D+KSSNVLLDE    ++ DFG+ARL      +   S       T+ GT  Y+P EY ++ R +   D +S+GVVLLE L G+R                             T +A  G      W    A        DP      P + + L Q   +A  CL  R  RRP M QV    +E+Q
Sbjct:  334 PSLIHGDVKSSNVLLDERLMPKLGDFGLARLSRFTGANPGQSSSVARTRTVRGTLAYLPEEYVKTGRLAVDTDTFSFGVVLLETLAGQRAVRMHGAQPKYLKDLVEEEAEEAGVTLKGTQTAVQGGPAADTWAALVAAQIYKKHLDPRPGPCPPQLGLALGQ---LACCCLHRRAKRRPPMTQVYQTLEELQ 522          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: Y9963_DICDI (Probable serine/threonine-protein kinase DDB_G0272254 OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.270e-13
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  110 ARGIPH-----IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRP 370
            ARG+ H     IIHRD+KSSN+L+D++F  +++D G+AR  S   T  ++ T+A T     PE  +    + K DVYSY +VL ELLTG+ P
Sbjct: 1185 ARGMQHLHTRNIIHRDLKSSNLLMDKHFNIKIADLGIARETSFTQTMTTIGTVAWT----APEILRHESYNQKADVYSYAIVLYELLTGEEP 1272          
The following BLAST results are available for this feature:
BLAST of DC900011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 291
Match NameE-valueIdentityDescription
Y4312_ARATH6.576e-1432.20Probable LRR receptor-like serine/threonine-protei... [more]
TMKL1_ARATH6.576e-1434.81Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]
DRKB_DICDI1.122e-1333.54Probable serine/threonine-protein kinase drkB OS=D... [more]
SRF6_ARATH2.499e-1333.33Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
YR826_MIMIV3.263e-1330.72Putative serine/threonine-protein kinase/receptor ... [more]
SRF5_ARATH3.263e-1332.32Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SHKD_DICDI3.263e-1328.49Dual specificity protein kinase shkD OS=Dictyostel... [more]
DRKA_DICDI3.263e-1332.53Probable serine/threonine-protein kinase drkA OS=D... [more]
IRAK1_BOVIN4.262e-1331.77Interleukin-1 receptor-associated kinase 1 OS=Bos ... [more]
Y9963_DICDI7.270e-1344.57Probable serine/threonine-protein kinase DDB_G0272... [more]

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Properties
Property NameValue
Genbank descriptionDC900011 VSS Citrus sinensis cDNA clone VS27Q22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900011 ID=DC900011; Name=DC900011; organism=Citrus sinensis; type=EST; length=850bp
GTTTTTTTTTTTTTTTTTTTAGAGAAAATAGAAATTTTTATATATTAAAA
GGGAAAGGAAGAAACAGACTAGAAAAAAAAAAACTCGAGACTAGCTCGTG
CCGAATTCGGCACGAGGCATCCCACACATTATCCACCGGGATATGAAATC
GAGCAATGTTCTGCTAGACGAAAACTTTGAGGCCAGAGTCTCAGATTTTG
GAATGGCAAGACTAATGAGTGCGATGGATACACATTTGAGTGTCAGTACG
CTAGCAGGCACACCCGGCTATGTCCCTCCCGAATACTATCAAAGCTTTAG
ATGTTCGACGAAAGGCGATGTTTACAGTTATGGTGTAGTTTTGCTCGAGT
TGCTAACGGGAAAAAGGCCAACAGATTCAGCAGATTTCGGTGACAATAAC
CTAGTTGGGTGGGTAAAGCAGCATGCGAAGCTGAAAATAAGCGATGTCTT
TGATCCAGAACTCATGAAAGAGGATCCAAACATCGAGATTGAGCTTCTTC
AACACTTGCATGTAGCGAGTGCTTGCCTGGATGATCGACCATGGAGGAGA
CCGACAATGATTCAGGTTATGGCAATGTTTAAAGAAATCCAAGCCGGTTC
AGGACTTGACTCGCAATCTACTATTGCCACTGATGAAGGAGGTTTCGGTA
CAGTCGAAATGGTAGAGATGAGCATCCAAGAAGCTCCAGAACTAAGCACC
AAGCCTTAGNCCATTCAATTTTCAGGACAAGCATTCTTTCAGTGCCCCAA
AATTTTCCCACTTGAAAACCAAAAAAGTTGCCTTTGGTATCTCTACCATT
TAGTGTATGTAATCTTTGTATCCCTTTTGAAAATTCTTGTTATTTATACA
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