DC900011

Overview
NameDC900011
Unique NameDC900011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: Y2165_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.989e-11
Identity = 47/156 (30.13%), Postives = 77/156 (49.36%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLS-VSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFG-----DNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVM 571
            P ++HRD+++S++LLD+ FE R+     A      D + S +S L   P    P            DVY +G VLLEL+TGK    S D           + ++  + K  ++ + DP LM ++  +E E+     +A +CL+ +P RRP M  ++
Sbjct:  651 PPLVHRDVQASSILLDDKFEVRLGSLSEAYAQG--DAYQSRISRLLRLPQSSEPSSSGVTNAICSYDVYCFGKVLLELVTGKLGISSPDNALAKEYMEEALPYISTNEKELVTKILDPSLMVDEDLLE-EVWAMAIIAKSCLNPKPTRRPLMRHIV 803          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: RIPK4_MOUSE (Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.989e-11
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTH-LSVSTLAGTPGYVPPEYY--QSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPEL 463
            P ++H D+K +N+LLD ++  ++SDFG+A+      +H LS+  L GT  Y+PPE    +S    TK DVYS+ +V+  +LT K+P     F D   +     H  +K+     PEL
Sbjct:  137 PPLLHLDLKPANILLDAHYHVKISDFGLAKCNGMSHSHDLSMDGLFGTIAYLPPERIREKSRLFDTKHDVYSFAIVIWGVLTQKKP-----FADEKNI----LHIMMKVVKGHRPEL 244          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: RIPK2_HUMAN (Receptor-interacting serine/threonine-protein kinase 2 OS=Homo sapiens GN=RIPK2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.989e-11
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMA--RLMSAMDTHLSVST-LAGTPGYVPPEYY---QSFRCSTKGDVYSYGVVLLELLTGKRP 370
            P ++H D+K+ N+LLD  F  +++DFG++  R+MS   +  S S    GT  Y+PPE Y   Q  R S K D+YSY V+  E+L+ K+P
Sbjct:  140 PPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMMSLSQSRSSKSAPEGGTIIYMPPENYEPGQKSRASIKHDIYSYAVITWEVLSRKQP 228          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: NEK9_MOUSE (Serine/threonine-protein kinase Nek9 OS=Mus musculus GN=Nek9 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.989e-11
Identity = 46/142 (32.39%), Postives = 76/142 (53.52%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRP 553
            I+HRD+K+ N+ L +    ++ D+G+A+ +++   +    TL GTP Y+ PE  Q  + + K D+++ G V+ ELLT KR  D+     N L   VK    ++  +V       +     +EL+Q +H   ACLD  P +RP
Sbjct:  172 ILHRDIKTLNIFLTKANLIKLGDYGLAKKLNS--EYSMAETLVGTPYYMSPELCQGVKYNFKSDIWAVGCVIFELLTLKRTFDAT----NPLNLCVKIVQGIRAMEV-------DSSQYSLELIQLVH---ACLDQDPEQRP 297          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: NEK3_MOUSE (Serine/threonine-protein kinase Nek3 OS=Mus musculus GN=Nek3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.989e-11
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRP 370
            ++HRD+KS NV L  N + ++ DFG ARL+S+        T  GTP YVPPE +++   + K D++S G +L EL   K P
Sbjct:  121 VLHRDIKSKNVFLTHNGKVKLGDFGSARLLSSPMAF--ACTYVGTPYYVPPEIWENLPYNNKSDIWSLGCILYELCALKHP 199          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: CIPK7_ORYSJ (CBL-interacting protein kinase 7 OS=Oryza sativa subsp. japonica GN=CIPK7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.989e-11
Identity = 45/126 (35.71%), Postives = 62/126 (49.21%), Query Frame = 2
Query:  110 ARGIPHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYY-QSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGD---------NNLVGWVKQHAKLKISDVFDP 457
            ARG+ H   RD+K  NVLLD +   +VSDFG+A L  ++     + T  GTP +  PE   +      K D +S GV+L  LL G  P D ++  D           L  WV Q A+  +S + DP
Sbjct:  140 ARGVSH---RDVKPQNVLLDAHGNLKVSDFGLAALPDSLRDDGRLHTACGTPAFAAPEVLRRKAYDGAKADAWSCGVILFVLLAGHLPFDDSNIADMCRKAHRREYALPRWVSQPARRLVSRLLDP 262          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: Y0019_DICDI (Probable serine/threonine-protein kinase DDB_G0278521 OS=Dictyostelium discoideum GN=DDB_G0278521 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEI 589
            P IIHRD+ S N+L+D N  A+++DFG++R  +  D      T  G P +  PE  +  + S K DV+ +G++L E+ T + P     F D   +      A  KI++   P L +   +    L+Q       C D  P  RP+  Q++ + + +
Sbjct:  671 PQIIHRDLTSQNILIDRNGIAKIADFGISRFKN--DIGDKTMTSIGNPRFRSPEVTKGQKYSEKVDVFGFGMILYEMFTRRVP-----FHDYEQIA-----ASFKIANAERPPLPQTIDHRWSNLIQ------ICWDQNPNNRPSFDQILTIIQNL 808          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: RIPK4_HUMAN (Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTH-LSVSTLAGTPGYVPPEYY--QSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPEL 463
            P ++H D+K +N+LLD ++  ++SDFG+A+      +H LS+  L GT  Y+PPE    +S    TK DVYS+ +V+  +LT K+P     F D   +     H  +K+     PEL
Sbjct:  137 PPLLHLDLKPANILLDAHYHVKISDFGLAKCNGLSHSHDLSMDGLFGTIAYLPPERIREKSRLFDTKHDVYSFAIVIWGVLTQKKP-----FADEKNI----LHIMVKVVKGHRPEL 244          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMD----THLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGK 364
            IIHRD+K  N+LLD NF +++ D G++ +++  D    T    ++  GT  Y+ PEY ++   S K DVYS GVV+L+L+T K
Sbjct:  608 IIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDVSSRTIFKQTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAK 690          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: NEK5_MOUSE (Serine/threonine-protein kinase Nek5 OS=Mus musculus GN=Nek5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDEN-FEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNI 484
            I+HRD+KS N+ L +N   A++ DFG AR ++  D+     T AGTP Y+ PE  Q+   + K D++S G VL EL T K P +S +F  ++LV  + Q     IS  F  +L    P +
Sbjct:  120 ILHRDIKSQNIFLSKNGMVAKLGDFGTARTLN--DSMELAQTCAGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFESNNF--HHLVLKICQGRVAPISPHFSRDLQSLIPQL 235          
The following BLAST results are available for this feature:
BLAST of DC900011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 291
Match NameE-valueIdentityDescription
Y2165_ARATH3.989e-1130.13Probable LRR receptor-like serine/threonine-protei... [more]
RIPK4_MOUSE3.989e-1135.90Receptor-interacting serine/threonine-protein kina... [more]
RIPK2_HUMAN3.989e-1141.57Receptor-interacting serine/threonine-protein kina... [more]
NEK9_MOUSE3.989e-1132.39Serine/threonine-protein kinase Nek9 OS=Mus muscul... [more]
NEK3_MOUSE3.989e-1141.98Serine/threonine-protein kinase Nek3 OS=Mus muscul... [more]
CIPK7_ORYSJ3.989e-1135.71CBL-interacting protein kinase 7 OS=Oryza sativa s... [more]
Y0019_DICDI5.210e-1129.49Probable serine/threonine-protein kinase DDB_G0278... [more]
RIPK4_HUMAN5.210e-1135.90Receptor-interacting serine/threonine-protein kina... [more]
PUB52_ARATH5.210e-1142.17U-box domain-containing protein 52 OS=Arabidopsis ... [more]
NEK5_MOUSE5.210e-1138.33Serine/threonine-protein kinase Nek5 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionDC900011 VSS Citrus sinensis cDNA clone VS27Q22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900011 ID=DC900011; Name=DC900011; organism=Citrus sinensis; type=EST; length=850bp
GTTTTTTTTTTTTTTTTTTTAGAGAAAATAGAAATTTTTATATATTAAAA
GGGAAAGGAAGAAACAGACTAGAAAAAAAAAAACTCGAGACTAGCTCGTG
CCGAATTCGGCACGAGGCATCCCACACATTATCCACCGGGATATGAAATC
GAGCAATGTTCTGCTAGACGAAAACTTTGAGGCCAGAGTCTCAGATTTTG
GAATGGCAAGACTAATGAGTGCGATGGATACACATTTGAGTGTCAGTACG
CTAGCAGGCACACCCGGCTATGTCCCTCCCGAATACTATCAAAGCTTTAG
ATGTTCGACGAAAGGCGATGTTTACAGTTATGGTGTAGTTTTGCTCGAGT
TGCTAACGGGAAAAAGGCCAACAGATTCAGCAGATTTCGGTGACAATAAC
CTAGTTGGGTGGGTAAAGCAGCATGCGAAGCTGAAAATAAGCGATGTCTT
TGATCCAGAACTCATGAAAGAGGATCCAAACATCGAGATTGAGCTTCTTC
AACACTTGCATGTAGCGAGTGCTTGCCTGGATGATCGACCATGGAGGAGA
CCGACAATGATTCAGGTTATGGCAATGTTTAAAGAAATCCAAGCCGGTTC
AGGACTTGACTCGCAATCTACTATTGCCACTGATGAAGGAGGTTTCGGTA
CAGTCGAAATGGTAGAGATGAGCATCCAAGAAGCTCCAGAACTAAGCACC
AAGCCTTAGNCCATTCAATTTTCAGGACAAGCATTCTTTCAGTGCCCCAA
AATTTTCCCACTTGAAAACCAAAAAAGTTGCCTTTGGTATCTCTACCATT
TAGTGTATGTAATCTTTGTATCCCTTTTGAAAATTCTTGTTATTTATACA
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