DC900011

Overview
NameDC900011
Unique NameDC900011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEY-YQSFRCSTKGDVYSYGVVLLELLTGKRPTD-SADFGDNNLVGWV--KQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVM 571
            P ++H++ KSS VLLD     RV+D G+A ++    T    S +A   GY  PE  Y S+ C  + DV+S GVV+LELLTG+RP D +   G   L  W   + H    ++ + DP L    P     L +   + S  L   P  RP + +++
Sbjct:  619 PPVVHQNFKSSKVLLDGKLSVRVADSGLAYMLPPRPT----SQMA---GYAAPEVEYGSYTC--QSDVFSLGVVMLELLTGRRPFDRTRPRGHQTLAQWAIPRLHDIDALTRMVDPSLHGAYP--MKSLSRFADIISRSLQMEPGFRPPISEIV 761          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: RIPK2_MOUSE (Receptor-interacting serine/threonine-protein kinase 2 OS=Mus musculus GN=Ripk2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  122 PHIIHRDMKSSNVLLDENFEARVSDFGMA--RLMSAMDTHLSVST-LAGTPGYVPPEYY---QSFRCSTKGDVYSYGVVLLELLTGKRP 370
            P ++H D+K+ N+LLD  F  +++DFG++  R+MS   +    S    GT  Y+PPE Y   Q  R S K D+YSY V++ E+L+ K+P
Sbjct:  140 PPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMMSLSQSRSYKSAPEGGTIIYMPPENYEPGQKSRASVKHDIYSYAVIMWEVLSRKQP 228          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: LIMKB_DICDI (Probable LIM domain-containing serine/threonine-protein kinase DDB_G0286997 OS=Dictyostelium discoideum GN=DDB_G0286997 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 44/154 (28.57%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEI 589
            +IHRD+KS NVL+ E+F A+V DFG +R +  +  H++++   GT  Y+ PE ++        DVY++G+VL E++  K P +       N+  W      + ++    P +  + P+      ++  +  AC  D+P +RP+  ++    K+I
Sbjct:  821 VIHRDLKSLNVLITEDFTAKVIDFGTSRNVD-LAKHMTMN--LGTSCYMSPELFKGNGYDETCDVYAFGIVLWEIIARKEPYE-------NINSW---SIPVMVAKGDRPTIPADCPS------EYSKLIKACWTDKPKKRPSFKEICDTLKKI 955          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: KINX_DICDI (Probable serine/threonine-protein kinase kinX OS=Dictyostelium discoideum GN=kinX PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 34/91 (37.36%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTD---SADFG 391
            I+HRD+KS+N+L+D+N++ +V DFG AR++   D + S+ T+ GT  ++ PE         + D++S+G+VLLE+++  +P      A FG
Sbjct:  142 IVHRDLKSTNLLVDKNWKIKVCDFGFARIVEE-DNNKSM-TICGTDNWMSPEMITGLDYDERSDIFSFGIVLLEIISRVKPAPYMRDASFG 230          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: CIPK2_ARATH (CBL-interacting serine/threonine-protein kinase 2 OS=Arabidopsis thaliana GN=CIPK2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 48/131 (36.64%), Postives = 65/131 (49.62%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYY-QSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQ--HAKLKISDVFDPELMK-----EDPNIEIEL 496
            + HRD+K  N+LLD+N   +VSDFG++ L         + T  GTP YV PE   +     TK D++S GVVL  LL G  P     F D NL+   ++   A  K    F PE+ +      DPN E  +
Sbjct:  130 VYHRDIKPENLLLDDNDNLKVSDFGLSALADCKRQDGLLHTTCGTPAYVAPEVINRKGYEGTKADIWSCGVVLFVLLAGYLP-----FHDTNLMEMYRKIGKADFKCPSWFAPEVKRLLCKMLDPNHETRI 255          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: Y5720_ARATH (Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 47/156 (30.13%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCST-KGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEIQ 592
            ++H ++KS+N+LL ++FEA ++D+ ++ L    D+  +      +  Y  PE  +S R  T K DVYS+GV++ ELLTGK  +       ++++ WV+   +            +E+   +  L      A  C    P +RPTM QV+ M +EI+
Sbjct:  517 LVHGNLKSTNILLGQDFEACLTDYCLSVLT---DSSSASPDDPDSSSYKAPEIRKSSRRPTSKCDVYSFGVLIFELLTGKNASRHPFMAPHDMLDWVRAMRE------------EEEGTEDNRLGMMTETACLCRVTSPEQRPTMRQVIKMIQEIK 657          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 46/166 (27.71%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  110 ARGIPHI-----IHRDMKSSNVLLDENFEARVSDFGMARLMS-AMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNIEIELLQHLHVASACLDDRPWRRPTMIQVMAMFKEI 589
            ARG+ +I     +H ++K +N+LL+   E  ++D G+ RLM+ A ++H +  T +    Y PPE+  S + + K DVYS+GV+LLELLT K  +   D    + +         +   + D  +  +    E   +    +   C+   P +RP+M +++ + ++I
Sbjct:  590 ARGLSYINEKKQVHGNIKPNNILLNAENEPIITDLGLDRLMTPARESHTTGPTSSSP--YQPPEWSTSLKPNPKWDVYSFGVILLELLTSKVFSVDHDIDQFSNLSDSAAEENGRFLRLIDGAIRSDVARHEDAAMACFRLGIECVSSLPQKRPSMKELVQVLEKI 753          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: M3K13_PONAB (Mitogen-activated protein kinase kinase kinase 13 OS=Pongo abelii GN=MAP3K13 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSAD 385
            IIHRD+KS NVL+      ++SDFG ++ +S   T +S    AGT  ++ PE  ++   S K D++S+GVVL ELLTG+ P    D
Sbjct:  275 IIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTKMS---FAGTVAWLAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDVD 357          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: M3K13_MOUSE (Mitogen-activated protein kinase kinase kinase 13 OS=Mus musculus GN=Map3k13 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSAD 385
            IIHRD+KS NVL+      ++SDFG ++ +S   T +S    AGT  ++ PE  ++   S K D++S+GVVL ELLTG+ P    D
Sbjct:  274 IIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTKMS---FAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDVD 356          
BLAST of DC900011 vs. ExPASy Swiss-Prot
Match: M3K13_HUMAN (Mitogen-activated protein kinase kinase kinase 13 OS=Homo sapiens GN=MAP3K13 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  128 IIHRDMKSSNVLLDENFEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSAD 385
            IIHRD+KS NVL+      ++SDFG ++ +S   T +S    AGT  ++ PE  ++   S K D++S+GVVL ELLTG+ P    D
Sbjct:  275 IIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTKMS---FAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDVD 357          
The following BLAST results are available for this feature:
BLAST of DC900011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 291
Match NameE-valueIdentityDescription
SUB_ARATH6.805e-1134.42Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
RIPK2_MOUSE6.805e-1140.45Receptor-interacting serine/threonine-protein kina... [more]
LIMKB_DICDI6.805e-1128.57Probable LIM domain-containing serine/threonine-pr... [more]
KINX_DICDI6.805e-1137.36Probable serine/threonine-protein kinase kinX OS=D... [more]
CIPK2_ARATH6.805e-1136.64CBL-interacting serine/threonine-protein kinase 2 ... [more]
Y5720_ARATH8.887e-1130.13Probable inactive receptor kinase At5g67200 OS=Ara... [more]
RPKL_ARATH8.887e-1127.71Receptor protein kinase-like protein At4g34220 OS=... [more]
M3K13_PONAB8.887e-1143.02Mitogen-activated protein kinase kinase kinase 13 ... [more]
M3K13_MOUSE8.887e-1143.02Mitogen-activated protein kinase kinase kinase 13 ... [more]
M3K13_HUMAN8.887e-1143.02Mitogen-activated protein kinase kinase kinase 13 ... [more]

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Properties
Property NameValue
Genbank descriptionDC900011 VSS Citrus sinensis cDNA clone VS27Q22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900011 ID=DC900011; Name=DC900011; organism=Citrus sinensis; type=EST; length=850bp
GTTTTTTTTTTTTTTTTTTTAGAGAAAATAGAAATTTTTATATATTAAAA
GGGAAAGGAAGAAACAGACTAGAAAAAAAAAAACTCGAGACTAGCTCGTG
CCGAATTCGGCACGAGGCATCCCACACATTATCCACCGGGATATGAAATC
GAGCAATGTTCTGCTAGACGAAAACTTTGAGGCCAGAGTCTCAGATTTTG
GAATGGCAAGACTAATGAGTGCGATGGATACACATTTGAGTGTCAGTACG
CTAGCAGGCACACCCGGCTATGTCCCTCCCGAATACTATCAAAGCTTTAG
ATGTTCGACGAAAGGCGATGTTTACAGTTATGGTGTAGTTTTGCTCGAGT
TGCTAACGGGAAAAAGGCCAACAGATTCAGCAGATTTCGGTGACAATAAC
CTAGTTGGGTGGGTAAAGCAGCATGCGAAGCTGAAAATAAGCGATGTCTT
TGATCCAGAACTCATGAAAGAGGATCCAAACATCGAGATTGAGCTTCTTC
AACACTTGCATGTAGCGAGTGCTTGCCTGGATGATCGACCATGGAGGAGA
CCGACAATGATTCAGGTTATGGCAATGTTTAAAGAAATCCAAGCCGGTTC
AGGACTTGACTCGCAATCTACTATTGCCACTGATGAAGGAGGTTTCGGTA
CAGTCGAAATGGTAGAGATGAGCATCCAAGAAGCTCCAGAACTAAGCACC
AAGCCTTAGNCCATTCAATTTTCAGGACAAGCATTCTTTCAGTGCCCCAA
AATTTTCCCACTTGAAAACCAAAAAAGTTGCCTTTGGTATCTCTACCATT
TAGTGTATGTAATCTTTGTATCCCTTTTGAAAATTCTTGTTATTTATACA
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