Overview
Name DC900009 Unique Name DC900009 Type EST Organism Citrus sinensis (Sweet orange) Sequence length 664
Libraries
Library Name Type
VSS cdna_library
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900009 vs. ExPASy Swiss-Prot
Match:
Y4527_DICDI (COBW domain-containing protein DDB_G0274527 OS=Dictyostelium discoideum GN=DDB_G0274527 PE=3 SV=1)
HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 46/157 (29.30%), Postives = 78/157 (49.68%), Query Frame = 1
Query: 1 ERLDHILLETTGLANPAPLASVLWLD-----DQLESAVRLDSIITVVDAKNLLFQI-------DKYRHLSSYPEA------IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIHSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 417
+R D++++E++G++ P P+A + + L+ +LD+++TVVD L Q DK + E + Q+ F++V++LNK DLVS ER + +E I IN A ++ S V L E+LN +D + G L+E
Sbjct: 136 KRFDYLIIESSGISEPLPIAETFTFEIDGSIENLKDYTKLDTMVTVVDCSTWLEQYQSGESLKDKDMQATDQDERSLVDLLLDQVEFSNVILLNKCDLVSEER----VKTIEGLIKHINPEARLLRSTNSVVPLKEILNTGLFDFKKASEHPGWLKE 288
The following BLAST results are available for this feature:
BLAST of DC900009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 11
50 100 150 200 250 300 350 400 450 500 550 600 650 Expect = 7.60e-11 / Id = 29.30 Sequence Y4527_DICDI
Match Name E-value Identity Description
Y4527_DICDI 7.602e-11 29.30 COBW domain-containing protein DDB_G0274527 OS=Dic... [more]
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Properties
Property Name Value
Genbank description DC900009 VSS Citrus sinensis cDNA clone VS27Q21 5, mRNA sequence.
Sequences
The
following sequences are available for this feature:
EST sequence
>DC900009 ID=DC900009; Name=DC900009; organism=Citrus sinensis; type=EST; length=664bp back to top
