CN185735

Overview
NameCN185735
Unique NameCN185735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_PROM3 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplQ PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.870e-36
Identity = 71/114 (62.28%), Postives = 91/114 (79.82%), Query Frame = -2 
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVPKL RP DQR+ +  GLTTQL++ GR+ T +ARA A+R   ++MITLAK+GSL  RR+A+G+IY+KQ+VHALF + Q+RYG+R GGYTRIIRT+PR GDN  +A IE
Sbjct:    1 MRHQCRVPKLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSLASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIE 114
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CYAP7 (50S ribosomal protein L17 OS=Cyanothece sp. (strain PCC 7424) GN=rplQ PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.990e-35
Identity = 72/114 (63.16%), Postives = 86/114 (75.44%), Query Frame = -2 
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVP+L RP DQR+ L   LTT+L++HG+I T   RA AVR   DKMITLAKDGSL  RRQA+G+IY+KQ+VH LF + QERY  RNGGYTR++RTL R GDN  +A IE
Sbjct:    1 MRHRCRVPQLGRPADQRKALLRALTTELIRHGQITTTLTRAKAVRSQADKMITLAKDGSLAARRQAMGYIYDKQLVHRLFDQAQERYSNRNGGYTRVVRTLRRRGDNAEMAIIE 114
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CYAP8 (50S ribosomal protein L17 OS=Cyanothece sp. (strain PCC 8801) GN=rplQ PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.906e-35
Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = -2 
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVP L +P DQR+ L   LTT+L++HG+I T + RA AVR  V++MITLAKDGSL  RR+ALG++Y+KQ+VH+LFA+VQ RYG RNGGYTRI RTL R GDN  +A IE
Sbjct:    1 MRHQCRVPLLGKPADQRKALLRSLTTELIRHGQIMTTKTRAKAVRSEVERMITLAKDGSLAARRRALGYMYDKQLVHSLFADVQSRYGNRNGGYTRITRTLRRRGDNAEMAIIE 114
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_PROMA (50S ribosomal protein L17 OS=Prochlorococcus marinus GN=rplQ PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.662e-35
Identity = 69/114 (60.53%), Postives = 90/114 (78.95%), Query Frame = -2 
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVP+L RP DQR+ L  GLTTQL++ GR+ T + RA A+R  V++MI LAKDGSL  RR+A+G+IY+K++VH+LF + QERYG+R GGYTRI+RT+PR GDN  +A IE
Sbjct:    1 MRHQLRVPQLGRPADQRKALLRGLTTQLIREGRVTTTKTRAKALRDEVERMIGLAKDGSLAARRRAIGYIYDKKLVHSLFEKAQERYGDRQGGYTRIVRTVPRRGDNAEMAIIE 114
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_ANAVT (50S ribosomal protein L17 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplQ PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.662e-35
Identity = 72/114 (63.16%), Postives = 85/114 (74.56%), Query Frame = -2 
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RV KL +P DQRR L   LTT+L++HGRI T   RA  VR  VDK+ITLAKDGSL  RR+ALG+IY+KQ+VHALF +V  RYG R GGYTRI+ T+PR GDN  +A IE
Sbjct:    1 MRHRNRVKKLGKPADQRRALLRALTTELIRHGRITTTLVRAKVVRSEVDKIITLAKDGSLAARRRALGYIYDKQLVHALFEQVSSRYGNRQGGYTRILHTVPRRGDNAEMAIIE 114
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_ANASP (50S ribosomal protein L17 OS=Anabaena sp. (strain PCC 7120) GN=rplQ PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.662e-35
Identity = 72/114 (63.16%), Postives = 85/114 (74.56%), Query Frame = -2 
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RV KL +P DQRR L   LTT+L++HGRI T   RA  VR  VDK+ITLAKDGSL  RR+ALG+IY+KQ+VHALF +V  RYG R GGYTRI+ T+PR GDN  +A IE
Sbjct:    1 MRHRNRVKKLGKPADQRRALLRALTTELIRHGRITTTLVRAKVVRSEVDKIITLAKDGSLAARRRALGYIYDKQLVHALFEQVSSRYGNRQGGYTRILHTVPRRGDNAEMAIIE 114
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CYAP4 (50S ribosomal protein L17 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplQ PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.701e-35
Identity = 71/114 (62.28%), Postives = 87/114 (76.32%), Query Frame = -2 
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVP+L +P DQR+ L   LTT+L++HGRI T + RA AVR  VD+MITLAKDGSL  RRQALG++Y+ Q+V ALF +   RYG+R GGYTRIIRT+PR GDN  +A IE
Sbjct:    1 MRHRCRVPRLGKPADQRKALLRALTTELIRHGRITTTKVRAKAVRSEVDRMITLAKDGSLAARRQALGYLYDPQLVGALFEQASARYGQRQGGYTRIIRTIPRRGDNAEMAIIE 114
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYNY3 (50S ribosomal protein L17 OS=Synechocystis sp. (strain PCC 6803) GN=rplQ PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.484e-34
Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = -2 
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVP+L +P DQR+ L   LTT+L++HG+IKT +ARA AVR  VD+MITLAKDGSL  RR+ALG++Y+K  VHALFA+   RY +R+GGYTRIIRTL R GDN  +A IE
Sbjct:    1 MRHRCRVPQLGKPADQRKALLRALTTELIRHGQIKTTKARAKAVRSEVDRMITLAKDGSLAARRRALGYMYDKPTVHALFADAPSRYKDRDGGYTRIIRTLRRRGDNAEMAVIE 114
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CYAA5 (50S ribosomal protein L17 OS=Cyanothece sp. (strain ATCC 51142) GN=rplQ PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.938e-34
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = -2 
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVP+L +  DQR+ L   LTT+L++HG+IKT + RA AVR  V++MITLAKDGSL  RR+A+G++Y+KQ+VHALFAE  ERY  R GGYTRI+RTL R GDN  +A IE
Sbjct:    1 MRHRCRVPQLGKAADQRKALLRSLTTELIRHGQIKTTKTRAKAVRSEVERMITLAKDGSLSARRRAIGYLYDKQLVHALFAEAPERYSNRKGGYTRIVRTLRRRGDNAEMAIIE 114
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_PROM4 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplQ PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34
Identity = 66/114 (57.89%), Postives = 90/114 (78.95%), Query Frame = -2 
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH  RVPKL RP DQR+ +  GLTTQL++ GR+ T +A+A A+R   ++MITLAK+G+L  RR+A+G+IY+K++VH LF + Q+RYG+R GGYTRI+RT+PR GDN  +A IE
Sbjct:    1 MRHQLRVPKLGRPADQRKAILRGLTTQLIREGRVTTTKAKAKALRNEAERMITLAKEGTLAARRRAIGYIYDKKLVHQLFEKAQDRYGDREGGYTRIVRTVPRRGDNAEMAIIE 114
The following BLAST results are available for this feature:
BLAST of CN185735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_PROM37.870e-3662.2850S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_CYAP72.990e-3563.1650S ribosomal protein L17 OS=Cyanothece sp. (strai... [more]
RL17_CYAP83.906e-3563.1650S ribosomal protein L17 OS=Cyanothece sp. (strai... [more]
RL17_PROMA6.662e-3560.5350S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_ANAVT6.662e-3563.1650S ribosomal protein L17 OS=Anabaena variabilis (... [more]
RL17_ANASP6.662e-3563.1650S ribosomal protein L17 OS=Anabaena sp. (strain ... [more]
RL17_CYAP48.701e-3562.2850S ribosomal protein L17 OS=Cyanothece sp. (strai... [more]
RL17_SYNY31.484e-3463.1650S ribosomal protein L17 OS=Synechocystis sp. (st... [more]
RL17_CYAA51.938e-3461.4050S ribosomal protein L17 OS=Cyanothece sp. (strai... [more]
RL17_PROM42.532e-3457.8950S ribosomal protein L17 OS=Prochlorococcus marin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001M18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185735 ID=CN185735; Name=CN185735; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAACATAAGCTGGCCCCCTTGCACATCCCTATTA
CAACTGAAATACATCACCTTCATCGGCATGGCACCCTCTCAATCACAAAA
ATGTCAAATTGTTTATACATTCATACAAAATAAGCCACAAATTAAAGAAA
CAAACAAAGTACCTAAACAAGTTCAATGTAGGCCAGGGGGGGATTATCAC
CTCCCCTAGGAAGTGTTCTGATAATTCTAGTATATCCCCCATTCCGTTCA
CCATACCTTTCTTGAACCTCTGCGAACAAGGCATGTACAATCTGCTTCTC
ATAAATGAACCCAAGCGCTTGCCTCCTCTTATGAAGGGAACCGTCTTTAG
CGAGCGTAATCATCTTGTCAACATACTTCCTCACAGCACTGGCCCTAGCT
CTAGGGGTTTTGATCCTACCGTGCTTAAGCAATTGAGTGGTGAGGCCACC
GAAAAGCCCCCGCCGTTGGTCAGGAGGCCTGCTGAGCTTCGGAACTCGCC
TGCCGTGCCTCATTGCAGAAATTCGACACCCATTATCCACGAAAGCCAGA
CCATGTTCAAAACTTGTCAGGTCGGAAAAGCCGAGGGAGAGTAATGGGTT
GTTAGAAGCCAGACCCATGTAAGATGAGAAGAGGTGTGGTGCTTGTTGGG
TGCGGGTGAAACTGAAACTTGGGCGGCAGTGAGACGATGATGAGAATCGG
ATTGAAAAAAAAGAAATG
back to top