CN185735

Overview
NameCN185735
Unique NameCN185735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_THEP3 (50S ribosomal protein L17 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplQ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 56/106 (52.83%), Postives = 68/106 (64.15%), Query Frame = -2 
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQRR +   L T  LK+GRI T  ARA  VR   +KMITL K G LH RRQAL +I ++ +V  LF E+  +Y +R GGYTRI++  PR GD  PL  IE
Sbjct:    5 KLGRPSDQRRAMLRNLVTDFLKYGRITTTEARAKEVRSISEKMITLGKRGDLHARRQALAYILDESVVKKLFDEIAPKYKDRQGGYTRILKLGPRRGDGAPLVIIE 110
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOBM (50S ribosomal protein L17 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplQ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = -2 
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQR+ +   L T  LKHG+I+T   RA   R   +KMITLAK G LH RRQ L F+ E+ +V  LF E+  +Y ERNGGYTRI +  PR GD   +  +E
Sbjct:    6 KLGRPTDQRKAMLRNLVTSFLKHGKIETTETRAKETRSIAEKMITLAKRGDLHARRQVLSFVTEEAVVQRLFEEIAPKYAERNGGYTRIYKVGPRRGDGAEVVILE 111
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOBL (50S ribosomal protein L17 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplQ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = -2 
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQR+ +   L T  LKHG+I+T   RA   R   +KMITLAK G LH RRQ L F+ E+ +V  LF E+  +Y ERNGGYTRI +  PR GD   +  +E
Sbjct:    6 KLGRPTDQRKAMLRNLVTSFLKHGKIETTETRAKETRSIAEKMITLAKRGDLHARRQVLSFVTEETVVQRLFEEIAPKYAERNGGYTRIYKVGPRRGDGAEVVILE 111
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOBK (50S ribosomal protein L17 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = -2 
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQR+ +   L T  LKHG+I+T   RA   R   +KMITLAK G LH RRQ L F+ E+ +V  LF E+  +Y ERNGGYTRI +  PR GD   +  +E
Sbjct:    6 KLGRPTDQRKAMLRNLVTSFLKHGKIETTETRAKETRSIAEKMITLAKRGDLHARRQVLSFVTEETVVQRLFEEIAPKYAERNGGYTRIYKVGPRRGDGAEVVILE 111
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOBJ (50S ribosomal protein L17 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplQ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = -2 
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQR+ +   L T  LKHG+I+T   RA   R   +KMITLAK G LH RRQ L F+ E+ +V  LF E+  +Y ERNGGYTRI +  PR GD   +  +E
Sbjct:    6 KLGRPTDQRKAMLRNLVTSFLKHGKIETTETRAKETRSIAEKMITLAKRGDLHARRQVLSFVTEETVVQRLFEEIAPKYAERNGGYTRIYKVGPRRGDGAEVVILE 111
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOBH (50S ribosomal protein L17 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplQ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = -2 
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQR+ +   L T  LKHG+I+T   RA   R   +KMITLAK G LH RRQ L F+ E+ +V  LF E+  +Y ERNGGYTRI +  PR GD   +  +E
Sbjct:    6 KLGRPTDQRKAMLRNLVTSFLKHGKIETTETRAKETRSIAEKMITLAKRGDLHARRQVLSFVTEETVVQRLFEEIAPKYAERNGGYTRIYKVGPRRGDGAEVVILE 111
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOB6 (50S ribosomal protein L17 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplQ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = -2 
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQR+ +   L T  LKHG+I+T   RA   R   +KMITLAK G LH RRQ L F+ E+ +V  LF E+  +Y ERNGGYTRI +  PR GD   +  +E
Sbjct:    6 KLGRPTDQRKAMLRNLVTSFLKHGKIETTETRAKETRSIAEKMITLAKRGDLHARRQVLSFVTEETVVQRLFEEIAPKYAERNGGYTRIYKVGPRRGDGAEVVILE 111
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOB1 (50S ribosomal protein L17 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplQ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = -2 
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQR+ +   L T  LKHG+I+T   RA   R   +KMITLAK G LH RRQ L F+ E+ +V  LF E+  +Y ERNGGYTRI +  PR GD   +  +E
Sbjct:    6 KLGRPTDQRKAMLRNLVTSFLKHGKIETTETRAKETRSIAEKMITLAKRGDLHARRQVLSFVTEETVVQRLFEEIAPKYAERNGGYTRIYKVGPRRGDGAEVVILE 111
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOAB (50S ribosomal protein L17 OS=Clostridium acetobutylicum GN=rplQ PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 55/106 (51.89%), Postives = 66/106 (62.26%), Query Frame = -2 
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL RP DQRR +   L T  LKHG+I+T   RA   R   +KMITLAK G LH RRQ L F+ E+ +V  LF EV  +Y ERNGGYTRI +  PR GD   +  +E
Sbjct:    7 KLGRPTDQRRAMLRNLVTSFLKHGKIETTVTRAKETRSLAEKMITLAKRGDLHARRQVLSFVTEETVVKKLFDEVAPKYSERNGGYTRIYKMGPRRGDGAEIVILE 112
[Close]
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCPA (50S ribosomal protein L17 OS=Mycobacterium paratuberculosis GN=rplQ PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = -2 
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ L   L T L +HGRIKT   +A A+R Y +K+IT AK G+LH RR+ L  I +K +VH LF E+   + +RNGGYTRII+  PR GDN P+A IE
Sbjct:    8 PRLGGSSSHQKALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGALHNRREVLKKIRDKDVVHVLFEEIGPFFADRNGGYTRIIKVEPRKGDNSPMAVIE 114
The following BLAST results are available for this feature:
BLAST of CN185735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_THEP33.102e-2452.8350S ribosomal protein L17 OS=Thermoanaerobacter ps... [more]
RL17_CLOBM6.910e-2450.0050S ribosomal protein L17 OS=Clostridium botulinum... [more]
RL17_CLOBL6.910e-2450.0050S ribosomal protein L17 OS=Clostridium botulinum... [more]
RL17_CLOBK6.910e-2450.0050S ribosomal protein L17 OS=Clostridium botulinum... [more]
RL17_CLOBJ6.910e-2450.0050S ribosomal protein L17 OS=Clostridium botulinum... [more]
RL17_CLOBH6.910e-2450.0050S ribosomal protein L17 OS=Clostridium botulinum... [more]
RL17_CLOB66.910e-2450.0050S ribosomal protein L17 OS=Clostridium botulinum... [more]
RL17_CLOB16.910e-2450.0050S ribosomal protein L17 OS=Clostridium botulinum... [more]
RL17_CLOAB9.025e-2451.8950S ribosomal protein L17 OS=Clostridium acetobuty... [more]
RL17_MYCPA3.429e-2348.6050S ribosomal protein L17 OS=Mycobacterium paratub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185735 ID=CN185735; Name=CN185735; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAACATAAGCTGGCCCCCTTGCACATCCCTATTA
CAACTGAAATACATCACCTTCATCGGCATGGCACCCTCTCAATCACAAAA
ATGTCAAATTGTTTATACATTCATACAAAATAAGCCACAAATTAAAGAAA
CAAACAAAGTACCTAAACAAGTTCAATGTAGGCCAGGGGGGGATTATCAC
CTCCCCTAGGAAGTGTTCTGATAATTCTAGTATATCCCCCATTCCGTTCA
CCATACCTTTCTTGAACCTCTGCGAACAAGGCATGTACAATCTGCTTCTC
ATAAATGAACCCAAGCGCTTGCCTCCTCTTATGAAGGGAACCGTCTTTAG
CGAGCGTAATCATCTTGTCAACATACTTCCTCACAGCACTGGCCCTAGCT
CTAGGGGTTTTGATCCTACCGTGCTTAAGCAATTGAGTGGTGAGGCCACC
GAAAAGCCCCCGCCGTTGGTCAGGAGGCCTGCTGAGCTTCGGAACTCGCC
TGCCGTGCCTCATTGCAGAAATTCGACACCCATTATCCACGAAAGCCAGA
CCATGTTCAAAACTTGTCAGGTCGGAAAAGCCGAGGGAGAGTAATGGGTT
GTTAGAAGCCAGACCCATGTAAGATGAGAAGAGGTGTGGTGCTTGTTGGG
TGCGGGTGAAACTGAAACTTGGGCGGCAGTGAGACGATGATGAGAATCGG
ATTGAAAAAAAAGAAATG
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