CN185735

Overview
NameCN185735
Unique NameCN185735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_HELMI (50S ribosomal protein L17 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 52/106 (49.06%), Postives = 67/106 (63.21%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            K SRP + RR L   +TT LLKHG+I T   +A  +R+  DKMITL K G LH RRQAL FI E+ +V  LF E+  +Y  R GGYTR+++   R GD  P+  +E
Sbjct:    5 KFSRPTNHRRALLRNITTSLLKHGKIVTTEPKAKELRRIADKMITLGKQGDLHARRQALAFIQEESVVTHLFKEIAPKYATRQGGYTRVLKAGFRRGDAAPMCIVE 110          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_THEFY (50S ribosomal protein L17 OS=Thermobifida fusca (strain YX) GN=rplQ PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 54/107 (50.47%), Postives = 66/107 (61.68%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L   P   R +   L T L +HGRIKT  A+A  +R Y +K+ITL K G LH RRQ L  I +K +VH LF E+  RY  RNGGYTRI +   R GDN P+A IE
Sbjct:    8 PRLGGGPAHERLMLANLATALFRHGRIKTTEAKAKRLRPYAEKLITLGKRGDLHARRQVLTKIRDKAVVHELFTEIGPRYENRNGGYTRITKIGNRKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCSS (50S ribosomal protein L17 OS=Mycobacterium sp. (strain MCS) GN=rplQ PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ L   L T L +HGRIKT   +A A+R Y +K+IT AK G LH RR+ +  I +K +VH LFAE+   + +R GGYTRII+  PR GDN P+A IE
Sbjct:    8 PRLGGSSSHQKALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGELHNRREVMKKIRDKDVVHTLFAEIGPFFADREGGYTRIIKVEPRKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCSK (50S ribosomal protein L17 OS=Mycobacterium sp. (strain KMS) GN=rplQ PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ L   L T L +HGRIKT   +A A+R Y +K+IT AK G LH RR+ +  I +K +VH LFAE+   + +R GGYTRII+  PR GDN P+A IE
Sbjct:    8 PRLGGSSSHQKALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGELHNRREVMKKIRDKDVVHTLFAEIGPFFADREGGYTRIIKVEPRKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCSJ (50S ribosomal protein L17 OS=Mycobacterium sp. (strain JLS) GN=rplQ PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ L   L T L +HGRIKT   +A A+R Y +K+IT AK G LH RR+ +  I +K +VH LFAE+   + +R GGYTRII+  PR GDN P+A IE
Sbjct:    8 PRLGGSSSHQKALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGELHNRREVMKKIRDKDVVHTLFAEIGPFFADREGGYTRIIKVEPRKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_DESAH (50S ribosomal protein L17 OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=rplQ PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 53/114 (46.49%), Postives = 67/114 (58.77%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH +   KL+R    R+ +F  + T L KH  IKT  A+A  +RK  DKM+TLAK G LH RRQA   I EK +VH LF +   ++  R GGYTRI +   R GD  P+  IE
Sbjct:    1 MRHRKSGAKLNRTSSHRKAMFRNMVTSLFKHSSIKTTEAKAKELRKLADKMVTLAKRGDLHARRQAFSIIREKDVVHQLFNDAPSKFASRQGGYTRITKLGLRSGDAAPMTTIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCS2 (50S ribosomal protein L17 OS=Mycobacterium smegmatis GN=rplQ PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 52/107 (48.60%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      +  L   L T L +HGRIKT   +A A+R Y +K+IT AK G+LH RR+ +  I +K +VH LFAE+   Y +RNGGYTRII+   R GDN P+A IE
Sbjct:    8 PRLGGSSSHQSALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGALHNRREVMKKIRDKDVVHTLFAEIGPFYADRNGGYTRIIKVENRKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOB8 (50S ribosomal protein L17 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplQ PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL  P DQRR +   L T LLKHG+I+T   RA   R   +KMITL K G LH RRQ L ++ E+ +V  LF  V  +Y ERNGGYTRII+  PR GD   +  +E
Sbjct:    6 KLGLPTDQRRAMLRNLVTSLLKHGKIETTETRAKETRSIAEKMITLGKRGDLHARRQVLSYVQEELVVKNLFDNVAPKYTERNGGYTRIIKKGPRRGDGAEIVILE 111          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOBB (50S ribosomal protein L17 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplQ PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 54/106 (50.94%), Postives = 65/106 (61.32%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL  P DQRR +   L T LLKHG+I+T   RA   R   +KMITL K G LH RRQAL FI E+ +V  LF  V  +Y ERNGGYTR+ +  PR GD   +  +E
Sbjct:    6 KLGLPTDQRRAMLRNLVTSLLKHGKIETTVTRAKETRSIAEKMITLGKRGDLHARRQALAFIQEELVVKNLFDNVAPKYAERNGGYTRMYKKGPRRGDGAEVVILE 111          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOBA (50S ribosomal protein L17 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplQ PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 54/106 (50.94%), Postives = 65/106 (61.32%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL  P DQRR +   L T LLKHG+I+T   RA   R   +KMITL K G LH RRQAL FI E+ +V  LF  V  +Y ERNGGYTR+ +  PR GD   +  +E
Sbjct:    6 KLGLPTDQRRAMLRNLVTSLLKHGKIETTVTRAKETRSIAEKMITLGKRGDLHARRQALAFIQEELVVKNLFDNVAPKYAERNGGYTRMYKKGPRRGDGAEVVILE 111          
The following BLAST results are available for this feature:
BLAST of CN185735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_HELMI7.640e-2349.0650S ribosomal protein L17 OS=Heliobacterium modest... [more]
RL17_THEFY9.978e-2350.4750S ribosomal protein L17 OS=Thermobifida fusca (s... [more]
RL17_MYCSS9.978e-2347.6650S ribosomal protein L17 OS=Mycobacterium sp. (st... [more]
RL17_MYCSK9.978e-2347.6650S ribosomal protein L17 OS=Mycobacterium sp. (st... [more]
RL17_MYCSJ9.978e-2347.6650S ribosomal protein L17 OS=Mycobacterium sp. (st... [more]
RL17_DESAH9.978e-2346.4950S ribosomal protein L17 OS=Desulfobacterium auto... [more]
RL17_MYCS21.303e-2248.6050S ribosomal protein L17 OS=Mycobacterium smegmat... [more]
RL17_CLOB81.303e-2250.0050S ribosomal protein L17 OS=Clostridium beijerinc... [more]
RL17_CLOBB2.223e-2250.9450S ribosomal protein L17 OS=Clostridium botulinum... [more]
RL17_CLOBA2.223e-2250.9450S ribosomal protein L17 OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185735 ID=CN185735; Name=CN185735; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAACATAAGCTGGCCCCCTTGCACATCCCTATTA
CAACTGAAATACATCACCTTCATCGGCATGGCACCCTCTCAATCACAAAA
ATGTCAAATTGTTTATACATTCATACAAAATAAGCCACAAATTAAAGAAA
CAAACAAAGTACCTAAACAAGTTCAATGTAGGCCAGGGGGGGATTATCAC
CTCCCCTAGGAAGTGTTCTGATAATTCTAGTATATCCCCCATTCCGTTCA
CCATACCTTTCTTGAACCTCTGCGAACAAGGCATGTACAATCTGCTTCTC
ATAAATGAACCCAAGCGCTTGCCTCCTCTTATGAAGGGAACCGTCTTTAG
CGAGCGTAATCATCTTGTCAACATACTTCCTCACAGCACTGGCCCTAGCT
CTAGGGGTTTTGATCCTACCGTGCTTAAGCAATTGAGTGGTGAGGCCACC
GAAAAGCCCCCGCCGTTGGTCAGGAGGCCTGCTGAGCTTCGGAACTCGCC
TGCCGTGCCTCATTGCAGAAATTCGACACCCATTATCCACGAAAGCCAGA
CCATGTTCAAAACTTGTCAGGTCGGAAAAGCCGAGGGAGAGTAATGGGTT
GTTAGAAGCCAGACCCATGTAAGATGAGAAGAGGTGTGGTGCTTGTTGGG
TGCGGGTGAAACTGAAACTTGGGCGGCAGTGAGACGATGATGAGAATCGG
ATTGAAAAAAAAGAAATG
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