CN185735

Overview
NameCN185735
Unique NameCN185735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_RHOSR (50S ribosomal protein L17 OS=Rhodococcus sp. (strain RHA1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  172 RRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 465
            ++ +F  L T L +HGRI T  ++A A+R Y +K++T AK G+L  RR+ L  I  K +VH LFAE+   Y +R+GGYTRII+T+PR GDN P+A IE
Sbjct:   17 QKAIFANLATALFEHGRITTTESKAKALRPYAEKLVTHAKAGTLAHRREVLKVIRNKDVVHTLFAEIGPFYADRDGGYTRIIKTVPRKGDNAPMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_RHOOB (50S ribosomal protein L17 OS=Rhodococcus opacus (strain B4) GN=rplQ PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  172 RRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 465
            ++ +F  L T L +HGRI T  ++A A+R Y +K++T AK G+L  RR+ L  I  K +VH LFAE+   Y +R+GGYTRII+T+PR GDN P+A IE
Sbjct:   17 QKAIFANLATALFEHGRITTTESKAKALRPYAEKLVTHAKAGTLAHRREVLKVIRNKDVVHTLFAEIGPFYADRDGGYTRIIKTVPRKGDNAPMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOK5 (50S ribosomal protein L17 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplQ PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL  P D RR +   L T  LKHG+I+T   RA   R   +KMITLAK G LH RRQ L F+ E+++V  LF  +  +Y ERNGGYTR+ +  PR GD   L  +E
Sbjct:    6 KLGLPSDHRRAMLRNLVTSFLKHGKIQTTVTRAKEARSLAEKMITLAKRGDLHARRQVLSFVTEEEVVKNLFTNIAPKYAERNGGYTRMYKIGPRRGDGAELVILE 111          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLOK1 (50S ribosomal protein L17 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplQ PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL  P D RR +   L T  LKHG+I+T   RA   R   +KMITLAK G LH RRQ L F+ E+++V  LF  +  +Y ERNGGYTR+ +  PR GD   L  +E
Sbjct:    6 KLGLPSDHRRAMLRNLVTSFLKHGKIQTTVTRAKEARSLAEKMITLAKRGDLHARRQVLSFVTEEEVVKNLFTNIAPKYAERNGGYTRMYKIGPRRGDGAELVILE 111          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_SYMTH (50S ribosomal protein L17 OS=Symbiobacterium thermophilum GN=rplQ PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL R    R+ LF  + T L    RI+T  A+A AV+   ++MITLAK G LH RRQAL +IY++ +V  LF ++  RY +RNGGYTR+IRT  R GD  P+A +E
Sbjct:    6 KLGRDSSARKALFRAVVTALFDKERIETTEAKAKAVQSIAEEMITLAKRGDLHARRQALAYIYDESVVTKLFNQIAPRYADRNGGYTRVIRTGVRKGDAAPMAILE 111          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_NOCFA (50S ribosomal protein L17 OS=Nocardia farcinica GN=rplQ PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = -2
Query:  172 RRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 465
            ++ +F  L T L +HGRI T  A+A AVR Y +K+IT AK G+L  RR+ L  I  K +VH+LFAE+   +  R GGYTRI +TLPR GDN P+A IE
Sbjct:   17 QKAIFANLATALFEHGRITTTEAKAKAVRPYAEKLITKAKAGTLADRREVLKVIRNKDVVHSLFAEIGPSFEGREGGYTRITKTLPRKGDNAPMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCVP (50S ribosomal protein L17 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ L   L T L +HGRIKT   +A A+R Y +K+IT AK G+LH RR+ +  I +K +VH LFAE+   + +R+GGYTRII+   R GDN P+A IE
Sbjct:    8 PRLGGSSSHQKALLANLATSLFEHGRIKTTEPKARALRPYAEKLITHAKKGTLHNRREVMKKIRDKDVVHVLFAEIGPFFADRSGGYTRIIKVENRKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CALS8 (50S ribosomal protein L17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplQ PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = -2
Query:  172 RVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 498
            ++ KL R  D R+ L   L T L KHGRI T  A+A  +R+  +K+IT+AK G L   R+ LG++YE+ + + LF ++  RY  RNGGYTRII+  PR GD   + YIE
Sbjct:    3 KLRKLKRDTDHRQALMRNLATSLFKHGRIMTTEAKAKDLRRVAEKLITIAKKGDLASYRRVLGYLYEEDVAYDLFQKIAPRYQGRNGGYTRIIKVGPRKGDGAMMVYIE 111          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_ANATD (50S ribosomal protein L17 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplQ PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 50/109 (45.87%), Postives = 69/109 (63.30%), Query Frame = -2
Query:  172 RVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 498
            ++ KL R  D R+ L   L T L KHGRI T  A+A  +R+  +K+IT+AK G L   R+ LG++YE+ + + LF ++  RY  RNGGYTRII+  PR GD   + YIE
Sbjct:    3 KLRKLKRDTDHRQALMRNLATSLFKHGRIMTTEAKAKDLRRIAEKLITIAKKGDLASYRRVLGYLYEEDVAYDLFQKIAPRYQGRNGGYTRIIKVGPRKGDGAMMVYIE 111          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCLE (50S ribosomal protein L17 OS=Mycobacterium leprae GN=rplQ PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ L   L   L +HGRIKT   +A A+R Y +K+IT AK G+LH RR+ L  + +K +VHALFAE+   + +R+GGYTRII+   R GDN P+A IE
Sbjct:    8 PRLGGSSSHQKALLTNLAASLFEHGRIKTTEPKARALRPYAEKLITHAKKGTLHNRREVLKKLPDKDVVHALFAEIGPFFSDRDGGYTRIIKVEARKGDNAPMAVIE 114          
The following BLAST results are available for this feature:
BLAST of CN185735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_RHOSR3.792e-2250.0050S ribosomal protein L17 OS=Rhodococcus sp. (stra... [more]
RL17_RHOOB3.792e-2250.0050S ribosomal protein L17 OS=Rhodococcus opacus (s... [more]
RL17_CLOK54.952e-2248.1150S ribosomal protein L17 OS=Clostridium kluyveri ... [more]
RL17_CLOK14.952e-2248.1150S ribosomal protein L17 OS=Clostridium kluyveri ... [more]
RL17_SYMTH6.468e-2249.0650S ribosomal protein L17 OS=Symbiobacterium therm... [more]
RL17_NOCFA6.468e-2252.0450S ribosomal protein L17 OS=Nocardia farcinica GN... [more]
RL17_MYCVP6.468e-2246.7350S ribosomal protein L17 OS=Mycobacterium vanbaal... [more]
RL17_CALS86.468e-2245.8750S ribosomal protein L17 OS=Caldicellulosiruptor ... [more]
RL17_ANATD6.468e-2245.8750S ribosomal protein L17 OS=Anaerocellum thermoph... [more]
RL17_MYCLE1.441e-2146.7350S ribosomal protein L17 OS=Mycobacterium leprae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185735 ID=CN185735; Name=CN185735; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAACATAAGCTGGCCCCCTTGCACATCCCTATTA
CAACTGAAATACATCACCTTCATCGGCATGGCACCCTCTCAATCACAAAA
ATGTCAAATTGTTTATACATTCATACAAAATAAGCCACAAATTAAAGAAA
CAAACAAAGTACCTAAACAAGTTCAATGTAGGCCAGGGGGGGATTATCAC
CTCCCCTAGGAAGTGTTCTGATAATTCTAGTATATCCCCCATTCCGTTCA
CCATACCTTTCTTGAACCTCTGCGAACAAGGCATGTACAATCTGCTTCTC
ATAAATGAACCCAAGCGCTTGCCTCCTCTTATGAAGGGAACCGTCTTTAG
CGAGCGTAATCATCTTGTCAACATACTTCCTCACAGCACTGGCCCTAGCT
CTAGGGGTTTTGATCCTACCGTGCTTAAGCAATTGAGTGGTGAGGCCACC
GAAAAGCCCCCGCCGTTGGTCAGGAGGCCTGCTGAGCTTCGGAACTCGCC
TGCCGTGCCTCATTGCAGAAATTCGACACCCATTATCCACGAAAGCCAGA
CCATGTTCAAAACTTGTCAGGTCGGAAAAGCCGAGGGAGAGTAATGGGTT
GTTAGAAGCCAGACCCATGTAAGATGAGAAGAGGTGTGGTGCTTGTTGGG
TGCGGGTGAAACTGAAACTTGGGCGGCAGTGAGACGATGATGAGAATCGG
ATTGAAAAAAAAGAAATG
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