CN185735

Overview
NameCN185735
Unique NameCN185735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCLB (50S ribosomal protein L17 OS=Mycobacterium leprae (strain Br4923) GN=rplQ PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ L   L   L +HGRIKT   +A A+R Y +K+IT AK G+LH RR+ L  + +K +VHALFAE+   + +R+GGYTRII+   R GDN P+A IE
Sbjct:    8 PRLGGSSSHQKALLTNLAASLFEHGRIKTTEPKARALRPYAEKLITHAKKGTLHNRREVLKKLPDKDVVHALFAEIGPFFSDRDGGYTRIIKVEARKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_CLONN (50S ribosomal protein L17 OS=Clostridium novyi (strain NT) GN=rplQ PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            KL  P D RR +   L T  LK+G+++T   RA   R   +KMITLAK G LH RRQ L ++ EK++V  LFAE+  +Y +RNGGYTR+ +  PR GD   +  +E
Sbjct:    6 KLGLPTDHRRAMLRNLVTSFLKNGKVETTITRAKEARNMAEKMITLAKRGDLHARRQVLAYVTEKEVVDHLFAEIAPKYADRNGGYTRMYKMGPRRGDGAEVVILE 111          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCA9 (50S ribosomal protein L17 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=rplQ PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  172 KLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 489
            +L      ++ +   L T L +HGRIKT   +A  +R Y +K+IT AK G LH RR+ L  I +K +VHALF E+   Y +RNGGYTRII+   R GDN P+A IE
Sbjct:    9 RLGGSSSHQKAILANLATALFEHGRIKTTETKARVLRPYAEKLITHAKKGDLHNRREVLKKIRDKDVVHALFEEIGPFYADRNGGYTRIIKVENRKGDNAPMAIIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_GEOMG (50S ribosomal protein L17 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplQ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH +   +L R    R  +F  + T  L+H RI T  A+A  +R   +KMITL K G LH +RQA  +I +K++V  LF+ +  RY ER+GGYTRII+   R GDN PL+ IE
Sbjct:    1 MRHNKAGRRLGRTTSHRIAMFRNMVTSFLEHERITTTDAKAKELRSIAEKMITLGKRGDLHAQRQAASYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDNAPLSVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCTU (50S ribosomal protein L17 OS=Mycobacterium tuberculosis GN=rplQ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ +   L T L +HGRI T   +A A+R Y +K+IT AK G+LH RR+ L  + +K +VH LFAE+   + +R+GGYTRII+   R GDN P+A IE
Sbjct:    8 PRLGGSSSHQKAILANLATSLFEHGRITTTEPKARALRPYAEKLITHAKKGALHNRREVLKKLRDKDVVHTLFAEIGPFFADRDGGYTRIIKIEARKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCTA (50S ribosomal protein L17 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplQ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ +   L T L +HGRI T   +A A+R Y +K+IT AK G+LH RR+ L  + +K +VH LFAE+   + +R+GGYTRII+   R GDN P+A IE
Sbjct:    8 PRLGGSSSHQKAILANLATSLFEHGRITTTEPKARALRPYAEKLITHAKKGALHNRREVLKKLRDKDVVHTLFAEIGPFFADRDGGYTRIIKIEARKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCBT (50S ribosomal protein L17 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplQ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ +   L T L +HGRI T   +A A+R Y +K+IT AK G+LH RR+ L  + +K +VH LFAE+   + +R+GGYTRII+   R GDN P+A IE
Sbjct:    8 PRLGGSSSHQKAILANLATSLFEHGRITTTEPKARALRPYAEKLITHAKKGALHNRREVLKKLRDKDVVHTLFAEIGPFFADRDGGYTRIIKIEARKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCBP (50S ribosomal protein L17 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rplQ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ +   L T L +HGRI T   +A A+R Y +K+IT AK G+LH RR+ L  + +K +VH LFAE+   + +R+GGYTRII+   R GDN P+A IE
Sbjct:    8 PRLGGSSSHQKAILANLATSLFEHGRITTTEPKARALRPYAEKLITHAKKGALHNRREVLKKLRDKDVVHTLFAEIGPFFADRDGGYTRIIKIEARKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_MYCBO (50S ribosomal protein L17 OS=Mycobacterium bovis GN=rplQ PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = -2
Query:  172 PKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 492
            P+L      ++ +   L T L +HGRI T   +A A+R Y +K+IT AK G+LH RR+ L  + +K +VH LFAE+   + +R+GGYTRII+   R GDN P+A IE
Sbjct:    8 PRLGGSSSHQKAILANLATSLFEHGRITTTEPKARALRPYAEKLITHAKKGALHNRREVLKKLRDKDVVHTLFAEIGPFFADRDGGYTRIIKIEARKGDNAPMAVIE 114          
BLAST of CN185735 vs. ExPASy Swiss-Prot
Match: RL17_DESPS (50S ribosomal protein L17 OS=Desulfotalea psychrophila GN=rplQ PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = -2
Query:  172 MRHGRRVPKLSRPPDQRRGLFGGLTTQLLKHGRIKTPRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRGGDNPPLAYIE 513
            MRH     KL R    R  +F  + T L +H RI T + +A  +R   +KMITL K G LH RRQAL ++    +VH LF E+ E++ +R GGYTRII+T  R GDN  +A IE
Sbjct:    1 MRHRYSGRKLGRTSSHRDAMFRNMVTSLFEHERIVTTKEKAKELRPIAEKMITLGKRGDLHARRQALSYVRCAGVVHKLFGEIAEQFADRKGGYTRIIQTGVRRGDNASMAIIE 114          
The following BLAST results are available for this feature:
BLAST of CN185735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_MYCLB1.441e-2146.7350S ribosomal protein L17 OS=Mycobacterium leprae ... [more]
RL17_CLONN1.441e-2146.2350S ribosomal protein L17 OS=Clostridium novyi (st... [more]
RL17_MYCA91.882e-2147.1750S ribosomal protein L17 OS=Mycobacterium abscess... [more]
RL17_GEOMG4.192e-2145.6150S ribosomal protein L17 OS=Geobacter metalliredu... [more]
RL17_MYCTU5.475e-2144.8650S ribosomal protein L17 OS=Mycobacterium tubercu... [more]
RL17_MYCTA5.475e-2144.8650S ribosomal protein L17 OS=Mycobacterium tubercu... [more]
RL17_MYCBT5.475e-2144.8650S ribosomal protein L17 OS=Mycobacterium bovis (... [more]
RL17_MYCBP5.475e-2144.8650S ribosomal protein L17 OS=Mycobacterium bovis (... [more]
RL17_MYCBO5.475e-2144.8650S ribosomal protein L17 OS=Mycobacterium bovis G... [more]
RL17_DESPS7.151e-2145.6150S ribosomal protein L17 OS=Desulfotalea psychrop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185735 ID=CN185735; Name=CN185735; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTAACATAAGCTGGCCCCCTTGCACATCCCTATTA
CAACTGAAATACATCACCTTCATCGGCATGGCACCCTCTCAATCACAAAA
ATGTCAAATTGTTTATACATTCATACAAAATAAGCCACAAATTAAAGAAA
CAAACAAAGTACCTAAACAAGTTCAATGTAGGCCAGGGGGGGATTATCAC
CTCCCCTAGGAAGTGTTCTGATAATTCTAGTATATCCCCCATTCCGTTCA
CCATACCTTTCTTGAACCTCTGCGAACAAGGCATGTACAATCTGCTTCTC
ATAAATGAACCCAAGCGCTTGCCTCCTCTTATGAAGGGAACCGTCTTTAG
CGAGCGTAATCATCTTGTCAACATACTTCCTCACAGCACTGGCCCTAGCT
CTAGGGGTTTTGATCCTACCGTGCTTAAGCAATTGAGTGGTGAGGCCACC
GAAAAGCCCCCGCCGTTGGTCAGGAGGCCTGCTGAGCTTCGGAACTCGCC
TGCCGTGCCTCATTGCAGAAATTCGACACCCATTATCCACGAAAGCCAGA
CCATGTTCAAAACTTGTCAGGTCGGAAAAGCCGAGGGAGAGTAATGGGTT
GTTAGAAGCCAGACCCATGTAAGATGAGAAGAGGTGTGGTGCTTGTTGGG
TGCGGGTGAAACTGAAACTTGGGCGGCAGTGAGACGATGATGAGAATCGG
ATTGAAAAAAAAGAAATG
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