CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LACCB (60 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.641e-35
Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            L P+    VL+  YG+P+I NDGVT+AK ++LED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV I  GIEK +KA V EL ++S +V    E+A VA+VS
Sbjct:   30 LGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHKVNGKKEIAQVASVS 150          

HSP 2 Score: 36.965 bits (84), Expect = 1.641e-35
Identity = 19/38 (50.00%), Postives = 27/38 (71.05%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AK++ F++D  A   +  GV++LA+ V  TLGPKGRNV
Sbjct:    2 AKEIKFSEDARAA--MLRGVDQLANTVKTTLGPKGRNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LACC3 (60 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groL PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.641e-35
Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            L P+    VL+  YG+P+I NDGVT+AK ++LED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV I  GIEK +KA V EL ++S +V    E+A VA+VS
Sbjct:   30 LGPKGRNVVLDKSYGSPEITNDGVTIAKSIDLEDHYENMGAKLVAEVASKTNDIAGDGTTTATVLAQSIIREGMKNVTAGANPVGIRTGIEKATKAAVDELHKISHKVNGKKEIAQVASVS 150          

HSP 2 Score: 36.965 bits (84), Expect = 1.641e-35
Identity = 19/38 (50.00%), Postives = 27/38 (71.05%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AK++ F++D  A   +  GV++LA+ V  TLGPKGRNV
Sbjct:    2 AKEIKFSEDARAA--MLRGVDQLANTVKTTLGPKGRNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LACBA (60 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=groL PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.137e-35
Identity = 67/121 (55.37%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            L P+    VLE  YG P I NDGVT+AK +ELED  EN+GAKLV + A+KTND+AGDGTTT+ VL Q ++ EG+K V AGANPV I RGIEK + A V  L +MS +V+   ++A +A++S
Sbjct:   30 LGPKGRNVVLEQSYGNPTITNDGVTIAKAIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVNEGMKNVTAGANPVGIRRGIEKATGAAVDALHKMSHDVKTKDDIAQIASIS 150          

HSP 2 Score: 41.2022 bits (95), Expect = 2.137e-35
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AK+L F++D  A  K+  GV+KLA+ V  TLGPKGRNV
Sbjct:    2 AKELKFSED--ARSKMLAGVDKLANTVKTTLGPKGRNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.189e-35
Identity = 72/124 (58.06%), Postives = 99/124 (79.84%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            +++ L P+    +LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ A+KT D+AGDGTTT+ VL Q LI EG+K VAAG NPV + RGI+KT++ALV+E+ +++K VE S +A VA VS
Sbjct:   26 VKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVASKTKDVAGDGTTTATVLVQALIREGLKNVAAGTNPVSLKRGIDKTTEALVAEIAKVAKPVEGSAIAQVATVS 149          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.859e-35
Identity = 72/124 (58.06%), Postives = 96/124 (77.42%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            + + + P+    +LE KYGAP+IVNDG+TVAK++ELEDP+EN GAKL+++ A+KT D+AGDGTTT+ VLAQ +I EG+K VAAGANPV + RGIEKT   LV E++ ++K VE   +A VA VS
Sbjct:   26 VRITMGPKGRNVLLEKKYGAPQIVNDGITVAKDIELEDPLENTGAKLIQEVASKTKDIAGDGTTTATVLAQSMIKEGLKNVAAGANPVAVRRGIEKTVSLLVKEIQTVAKPVEGEAIAQVATVS 149          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.859e-35
Identity = 74/124 (59.68%), Postives = 96/124 (77.42%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            + + L P+    VLE K+GAP+I+NDGVT+AKEVELEDP+EN GA+L+R+ A+KTND+AGDGTTT+ VLAQ LI EG+K VAAGANPV + +GI+KT  ALV E++  SK V    +A VA +S
Sbjct:   26 VRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAGDAIAQVATIS 149          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_EUBE2 (60 kDa chaperonin OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=groL PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.626e-35
Identity = 63/119 (52.94%), Postives = 90/119 (75.63%), Query Frame = 1
Query:  343 PRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            P+    VL+  YGAP I NDGVT+AK++ELED  EN+GA+LV++ AAKTND+AGDGTTT+ VLAQ +I EG+K +AAGANP+++ +G++K +   V  +  MS++V    ++A VAA+S
Sbjct:   32 PKGRNVVLDKSYGAPLITNDGVTIAKDIELEDAFENMGAQLVKEVAAKTNDVAGDGTTTATVLAQAMINEGMKNLAAGANPIVLRKGMKKATDCAVEAIAGMSEKVTGKDQIAKVAAIS 150          

HSP 2 Score: 41.2022 bits (95), Expect = 3.626e-35
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AK++ +  +  A K L+ GVNKLA+ V VT+GPKGRNV
Sbjct:    2 AKEIKYGIE--ARKALEEGVNKLANTVRVTIGPKGRNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.734e-35
Identity = 74/125 (59.20%), Postives = 100/125 (80.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            + + L P+    VLE K+GAP+IVNDGVT+AKE+ELEDP+EN GA+L+R+ A+KTND+AGDGTTT+ VLAQ LI EG++ VAAGANP+ + RG+EKT   LV E+  M+K VED++ +A+VA +S
Sbjct:   26 VRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_ANASL (60 kDa chaperonin 2 OS=Anabaena sp. (strain L31) GN=groL2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.734e-35
Identity = 72/124 (58.06%), Postives = 98/124 (79.03%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            +++ L P+    +LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ A+KT D+AGDGTTT+ VL Q LI EG+K VAAG NPV + RGI+KT++ALV E+ +++K VE S +A VA VS
Sbjct:   26 VKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVASKTKDVAGDGTTTATVLVQALIKEGLKNVAAGINPVSLKRGIDKTTEALVEEIAKVAKPVEGSAIAQVATVS 149          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_MYCGE (60 kDa chaperonin OS=Mycoplasma genitalium GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.306e-34
Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  343 PRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            P+    +LE K+  P I NDGVT+AKE+EL DPVENIGAK++  AA  TND+AGDGTTT+ +LAQ +   G++++  GANPV I RGIE  S  ++ EL++ SK++  + E+  VAA+S
Sbjct:   32 PKGQNVILERKFANPLITNDGVTIAKEIELSDPVENIGAKVISVAAVSTNDIAGDGTTTATILAQEMTNRGIEIINKGANPVNIRRGIEDASLLIIKELEKYSKKINTNEEIEQVAAIS 150          

HSP 2 Score: 41.2022 bits (95), Expect = 2.306e-34
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AK+L F KD  A  +L  G+NK+A+ V VT+GPKG+NV
Sbjct:    2 AKELIFGKD--ARTRLLQGINKIANAVKVTVGPKGQNV 37          
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LACCB1.641e-3557.8560 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH60_LACC31.641e-3557.8560 kDa chaperonin OS=Lactobacillus casei (strain A... [more]
CH60_LACBA2.137e-3555.3760 kDa chaperonin OS=Lactobacillus brevis (strain ... [more]
CH602_ANASP2.189e-3558.0660 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH601_TRIEI2.859e-3558.0660 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_ACAM12.859e-3559.6860 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH60_EUBE23.626e-3552.9460 kDa chaperonin OS=Eubacterium eligens (strain A... [more]
CH602_GLOVI3.734e-3559.2060 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH602_ANASL3.734e-3558.0660 kDa chaperonin 2 OS=Anabaena sp. (strain L31) G... [more]
CH60_MYCGE2.306e-3451.2660 kDa chaperonin OS=Mycoplasma genitalium GN=groL... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
back to top