CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_ALKMQ (60 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groL PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.468e-31
Identity = 67/125 (53.60%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    V++ K+G+P I NDGVT+A+E+ELED  EN+GA+LV++ A KTND+AGDGTTT+ +LAQ +I EG+K VAAGANP++I +GI K   A V+ELK +SK +E  E +A V A+S
Sbjct:   26 VKVTLGPKGRNVVIDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVAAGANPMIIKKGIHKAVDAAVAELKAVSKSIESKEAIAQVGAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 136.346 bits (342), Expect = 1.468e-31
Identity = 66/121 (54.55%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VLE K+G+P+I+NDG+T+AKE+ELED VEN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ EG++ VAAGANP+ + RGI+K +  LV+ +K+ ++ V DS+ +A V A+S
Sbjct:   30 LGPKGRNVVLEKKFGSPQIINDGITIAKEIELEDHVENTGVSLIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKRGIDKATDFLVARIKEHAQPVGDSKAIAQVGAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_TERTT (60 kDa chaperonin OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=groL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.702e-31
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VL+  +GAP +  DGV+VAKE+EL+D  EN+GA++V++ A+K +D AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V  +K  ++  EDS+ +A V  +S
Sbjct:   31 LGPKGRNVVLDKAFGAPTVTKDGVSVAKEIELKDKFENMGAQMVKEVASKASDDAGDGTTTATVLAQAIVNEGLKSVAAGMNPMDLKRGIDKAVAAAVEFVKSSAQPCEDSKSIAQVGTIS 151          

HSP 2 Score: 43.1282 bits (100), Expect = 1.702e-31
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 3
Query:  243 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AAKD+ F  D  A +K+  GVN LAD V  TLGPKGRNV
Sbjct:    2 AAKDVKFGDD--ARQKMLVGVNVLADAVKTTLGPKGRNV 38          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_THEPX (60 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.918e-31
Identity = 66/125 (52.80%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L PR    VL+ KYG+P + NDGVT+A+E+ELEDP EN GA+L+++ A KTND+AGDGTTT+ +LAQ ++ EG+K +AAGANP+L+ RGI K   A V  LK++SK +++ E +A VA++S
Sbjct:   26 VKVTLGPRGRNVVLDKKYGSPTVTNDGVTIAREIELEDPFENQGAQLLKEVATKTNDVAGDGTTTATLLAQAMVREGLKNLAAGANPMLLRRGIAKAVDAAVEGLKRISKPIDNKESIAHVASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_THEP3 (60 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.918e-31
Identity = 66/125 (52.80%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L PR    VL+ KYG+P + NDGVT+A+E+ELEDP EN GA+L+++ A KTND+AGDGTTT+ +LAQ ++ EG+K +AAGANP+L+ RGI K   A V  LK++SK +++ E +A VA++S
Sbjct:   26 VKVTLGPRGRNVVLDKKYGSPTVTNDGVTIAREIELEDPFENQGAQLLKEVATKTNDVAGDGTTTATLLAQAMVREGLKNLAAGANPMLLRRGIAKAVDAAVEGLKRISKPIDNKESIAHVASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_THEM4 (60 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groL PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.918e-31
Identity = 65/125 (52.00%), Postives = 97/125 (77.60%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    V+E  +G+P I NDGV++AKE+ELED  EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+L+ RGI+K   A V ++K +SK++ +S ++A VA++S
Sbjct:   26 VKITLGPKGRNVVIEKSWGSPTITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGIKNVTAGANPILVKRGIDKAVAAAVEKIKDISKKLSNSDDIAHVASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_TROWT (60 kDa chaperonin OS=Tropheryma whipplei (strain Twist) GN=groL PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 70/125 (56.00%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L PR    VLE K+GAP I NDGVT+AKE+EL+DP E IGA+LV++ A KT+D+AGDGTTTSVVLAQ ++ EG+K VAAGA+P+ + RGIEK+  A+   L   +KEVE ++E+A  A++S
Sbjct:   26 VKVTLGPRGRNVVLEKKWGAPVITNDGVTIAKEIELDDPYEKIGAELVKEVAKKTDDVAGDGTTTSVVLAQAMVREGLKNVAAGADPISLRRGIEKSVAAVSKALLTSAKEVETEAEIAACASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_TROWH (60 kDa chaperonin OS=Tropheryma whipplei GN=groL PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 70/125 (56.00%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L PR    VLE K+GAP I NDGVT+AKE+EL+DP E IGA+LV++ A KT+D+AGDGTTTSVVLAQ ++ EG+K VAAGA+P+ + RGIEK+  A+   L   +KEVE ++E+A  A++S
Sbjct:   26 VKVTLGPRGRNVVLEKKWGAPVITNDGVTIAKEIELDDPYEKIGAELVKEVAKKTDDVAGDGTTTSVVLAQAMVREGLKNVAAGADPISLRRGIEKSVAAVSKALLTSAKEVETEAEIAACASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_TROW8 (60 kDa chaperonin OS=Tropheryma whipplei (strain TW08/27) GN=groL PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 70/125 (56.00%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L PR    VLE K+GAP I NDGVT+AKE+EL+DP E IGA+LV++ A KT+D+AGDGTTTSVVLAQ ++ EG+K VAAGA+P+ + RGIEK+  A+   L   +KEVE ++E+A  A++S
Sbjct:   26 VKVTLGPRGRNVVLEKKWGAPVITNDGVTIAKEIELDDPYEKIGAELVKEVAKKTDDVAGDGTTTSVVLAQAMVREGLKNVAAGADPISLRRGIEKSVAAVSKALLTSAKEVETEAEIAACASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_THETN (60 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groL PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 66/125 (52.80%), Postives = 97/125 (77.60%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L PR    VL+ KYG P + NDGVT+A+E+ELEDP EN GA+L+++AA KTND+AGDGTTT+ +LAQ ++ EG+K +AAGANP+L+ RG+ K  +A V  L+++SK +++ E +A VAA+S
Sbjct:   26 VKVTLGPRGRNVVLDKKYGTPTVTNDGVTIAREIELEDPFENQGAQLLKEAATKTNDVAGDGTTTATLLAQVMVLEGLKNLAAGANPMLLRRGMAKAVEAAVEGLRRISKPIDNKESIAHVAAIS 150          
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ALKMQ1.468e-3153.6060 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH601_SYNY31.468e-3154.5560 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_TERTT1.702e-3147.9360 kDa chaperonin OS=Teredinibacter turnerae (stra... [more]
CH60_THEPX1.918e-3152.8060 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH60_THEP31.918e-3152.8060 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH60_THEM41.918e-3152.0060 kDa chaperonin OS=Thermosipho melanesiensis (st... [more]
CH60_TROWT2.504e-3156.0060 kDa chaperonin OS=Tropheryma whipplei (strain T... [more]
CH60_TROWH2.504e-3156.0060 kDa chaperonin OS=Tropheryma whipplei GN=groL P... [more]
CH60_TROW82.504e-3156.0060 kDa chaperonin OS=Tropheryma whipplei (strain T... [more]
CH60_THETN2.504e-3152.8060 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
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