CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LYSSC (60 kDa chaperonin OS=Lysinibacillus sphaericus (strain C3-41) GN=groL PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 69/125 (55.20%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELE+P EN+GAKLV + A+KTN++AGDGTTT+ VLAQ +I EG+K V AGANPV I +GI+K   A ++EL  +S+ V +  E+A VAA+S
Sbjct:   26 VKITLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELENPYENMGAKLVAEVASKTNEIAGDGTTTATVLAQAIIREGLKNVTAGANPVGIRKGIDKAVAAALTELHTISRPVSNKDEIAQVAAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_BACSU (60 kDa chaperonin OS=Bacillus subtilis GN=groL PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 68/125 (54.40%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + +G+E+     +  LK++SK +E  E +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPVGVRKGMEQAVAVAIENLKEISKPIEGKESIAQVAAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_BACA2 (60 kDa chaperonin OS=Bacillus amyloliquefaciens (strain FZB42) GN=groL PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 68/125 (54.40%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + +G+E+     +  LK++SK +E  E +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPVGVRKGMEQAVTVAIENLKEISKPIEGKESIAQVAAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 66/121 (54.55%), Postives = 91/121 (75.21%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++  G++ VAAGAN + + +GI+K S  LVS++K+M+K + DS  +A V  +S
Sbjct:   30 LGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKASDFLVSKIKEMAKPIADSNAIAQVGTIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_ARTAT (60 kDa chaperonin 2 OS=Arthrobacter aurescens (strain TC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 67/124 (54.03%), Postives = 95/124 (76.61%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            +++ L PR    VL+ K+GAP I NDGVT+A+EVEL+DP EN+GA+L ++ A KTND+AGDGTTT+ VLAQ L+ EG++ VAAGA P  I RGIE + +A+ + L + ++EVE +++A VAA+S
Sbjct:   26 VKVTLGPRGRNVVLDKKWGAPTITNDGVTIAREVELDDPYENLGAQLAKEVATKTNDVAGDGTTTATVLAQALVKEGLRNVAAGAAPGEIKRGIEVSVEAVAARLLENAREVEGTQVASVAAIS 149          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH601_ARTAT (60 kDa chaperonin 1 OS=Arthrobacter aurescens (strain TC1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 68/125 (54.40%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L PR    VLE K+GAP I NDGV++AKE+EL+DP E IGA+LV++ A KT+D+AGDGTTT+ VLAQ L+ EG++ VAAGA+P+ + RGIEK  +A++SEL   +KE+E   E+A  A++S
Sbjct:   26 VKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELDDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVKEGLRNVAAGADPLSLKRGIEKAVEAVISELLASAKEIETKEEIAATASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_METSS (60 kDa chaperonin OS=Methylovorus sp. (strain SS1 / DSM 11726) GN=groL PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.759e-31
Identity = 62/125 (49.60%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVS 696
            +++ L PRA M ++E  +GAP I  DGV+VAKE+EL+D  EN+GA++V+Q A+KT D+AGDGTTT+ VLAQ ++ EG+K V AG NP+ + RGI+K    +V EL ++SK +  + E+A V ++S
Sbjct:   27 VKVTLAPRAVMCLIERSFGAPVITKDGVSVAKEIELQDKFENMGAQMVKQVASKTADIAGDGTTTATVLAQAIVQEGMKHVVAGVNPMDLKRGIDKAVATVVDELHKLSKPITTNKEIAQVGSIS 151          

HSP 2 Score: 29.6462 bits (65), Expect = 3.759e-31
Identity = 16/35 (45.71%), Postives = 23/35 (65.71%), Query Frame = 3
Query:  243 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPK 347
            AAK++ F+   +A  ++  GVN LAD V VTL P+
Sbjct:    2 AAKEVKFHD--HARTRIVQGVNVLADAVKVTLAPR 34          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_SULMW (60 kDa chaperonin OS=Sulcia muelleri (strain GWSS) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 63/126 (50.00%), Postives = 99/126 (78.57%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV--EDSELADVAAVS 696
            +++ L P+    VL+  +G P++  DGV+VAKE+ELEDP+EN+GA++V++ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGI+K  +A+V++LK+ S+EV   + ++  VA++S
Sbjct:   26 VKVTLGPKGRNVVLQKSFGGPQVTKDGVSVAKEIELEDPIENLGAQMVKEVASKTNDIAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAVVNDLKKQSREVGGSNEKIKQVASIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 64/124 (51.61%), Postives = 91/124 (73.39%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            +++ L P+    VLE K+G P I  DGVTVAKE+EL+DP+EN+GA++VR+ A+KT+D+AGDGTTT+ +LAQ +  EGVK VAAGANP+ + RGI+K  +    E+K++SK V    +A V  +S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGGPTITKDGVTVAKEIELKDPLENMGAQMVREVASKTSDVAGDGTTTATILAQSIYREGVKAVAAGANPMALKRGIDKAVELATEEVKKLSKPVSGDMIAQVGTIS 149          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 67/125 (53.60%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE  +GAP I NDGV++A+E+ELE+  EN+GA+ V++ A KTND+AGDGTTT+ VLAQ +  EG+K VAAGANP+++ RGIEK  + LV E+K++SK VE  E ++ VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKSFGAPTITNDGVSIAREIELENHYENMGAQTVKEVATKTNDVAGDGTTTATVLAQAIFKEGLKNVAAGANPMILKRGIEKAVQKLVEEIKELSKPVEGKEAVSQVAAIS 150          
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LYSSC3.271e-3155.2060 kDa chaperonin OS=Lysinibacillus sphaericus (st... [more]
CH60_BACSU3.271e-3154.4060 kDa chaperonin OS=Bacillus subtilis GN=groL PE=... [more]
CH60_BACA23.271e-3154.4060 kDa chaperonin OS=Bacillus amyloliquefaciens (s... [more]
CH602_SYNSC3.271e-3154.5560 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_ARTAT3.271e-3154.0360 kDa chaperonin 2 OS=Arthrobacter aurescens (str... [more]
CH601_ARTAT3.271e-3154.4060 kDa chaperonin 1 OS=Arthrobacter aurescens (str... [more]
CH60_METSS3.759e-3149.6060 kDa chaperonin OS=Methylovorus sp. (strain SS1 ... [more]
CH60_SULMW4.272e-3150.0060 kDa chaperonin OS=Sulcia muelleri (strain GWSS)... [more]
CH60_SOLUE4.272e-3151.6160 kDa chaperonin OS=Solibacter usitatus (strain E... [more]
CH60_HALOH4.272e-3153.6060 kDa chaperonin OS=Halothermothrix orenii (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
back to top