CN185728 | Citrus Genome Database

Overview


Name	CN185728
Unique Name	CN185728
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	698

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2470	contig	Csv1_Contig2470:25..721.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_CALS8 (60 kDa chaperonin OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=groL PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.128e-34
Identity = 70/125 (56.00%), Postives = 100/125 (80.00%), Query Frame = 1

Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P+IVNDGVT+AKE+ELEDP EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ +I EG+K +AAGANP+++ RGI+K    +V E+K+MSK+V   E +  VA++S
Sbjct:   27 VKVTLGPKGRNVVLEKKFGSPQIVNDGVTIAKEIELEDPFENMGAQIVREVASKTNDIAGDGTTTATVLAQAMIREGLKNIAAGANPMILRRGIQKAVDVVVDEIKKMSKKVRGKEDITYVASIS 151

[Close]

BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_AZOVI (60 kDa chaperonin OS=Azotobacter vinelandii GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.095e-34
Identity = 63/121 (52.07%), Postives = 88/121 (72.73%), Query Frame = 1

Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VL+  +GAP I  DGV+VAKE+EL+D  EN+GA+LV+  A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V+ELK ++K   DS+ +A V  +S
Sbjct:   31 LGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASKANDEAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATIAIVAELKSLAKPCSDSKAIAQVGTIS 151

HSP 2 Score: 40.817 bits (94), Expect = 5.095e-34
Identity = 23/39 (58.97%), Postives = 26/39 (66.67%), Query Frame = 3

Query:  243 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AAK++ F     A KK+  GVN LAD V  TLGPKGRNV
Sbjct:    2 AAKEVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNV 38

[Close]

BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_PSEAE (60 kDa chaperonin OS=Pseudomonas aeruginosa GN=groL PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 8.643e-34
Identity = 61/121 (50.41%), Postives = 89/121 (73.55%), Query Frame = 1

Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VL+  +GAP I  DGV+VAKE+EL+D  EN+GA+LV+  A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V++LK+++K   D++ +A V  +S
Sbjct:   31 LGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATVAIVAQLKELAKPCADTKAIAQVGTIS 151

HSP 2 Score: 40.817 bits (94), Expect = 8.643e-34
Identity = 23/39 (58.97%), Postives = 26/39 (66.67%), Query Frame = 3

Query:  243 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AAK++ F     A KK+  GVN LAD V  TLGPKGRNV
Sbjct:    2 AAKEVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNV 38

[Close]

BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_PSEAB (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=groL PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.643e-34
Identity = 61/121 (50.41%), Postives = 89/121 (73.55%), Query Frame = 1

Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VL+  +GAP I  DGV+VAKE+EL+D  EN+GA+LV+  A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V++LK+++K   D++ +A V  +S
Sbjct:   31 LGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATVAIVAQLKELAKPCADTKAIAQVGTIS 151

HSP 2 Score: 40.817 bits (94), Expect = 8.643e-34
Identity = 23/39 (58.97%), Postives = 26/39 (66.67%), Query Frame = 3

Query:  243 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AAK++ F     A KK+  GVN LAD V  TLGPKGRNV
Sbjct:    2 AAKEVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNV 38

[Close]

BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_PSEA8 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain LESB58) GN=groL PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.643e-34
Identity = 61/121 (50.41%), Postives = 89/121 (73.55%), Query Frame = 1

Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VL+  +GAP I  DGV+VAKE+EL+D  EN+GA+LV+  A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V++LK+++K   D++ +A V  +S
Sbjct:   31 LGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATVAIVAQLKELAKPCADTKAIAQVGTIS 151

HSP 2 Score: 40.817 bits (94), Expect = 8.643e-34
Identity = 23/39 (58.97%), Postives = 26/39 (66.67%), Query Frame = 3

Query:  243 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AAK++ F     A KK+  GVN LAD V  TLGPKGRNV
Sbjct:    2 AAKEVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNV 38

[Close]

BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_PSEA7 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain PA7) GN=groL PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.643e-34
Identity = 61/121 (50.41%), Postives = 89/121 (73.55%), Query Frame = 1

Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VL+  +GAP I  DGV+VAKE+EL+D  EN+GA+LV+  A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V++LK+++K   D++ +A V  +S
Sbjct:   31 LGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATVAIVAQLKELAKPCADTKAIAQVGTIS 151

HSP 2 Score: 40.817 bits (94), Expect = 8.643e-34
Identity = 23/39 (58.97%), Postives = 26/39 (66.67%), Query Frame = 3

Query:  243 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AAK++ F     A KK+  GVN LAD V  TLGPKGRNV
Sbjct:    2 AAKEVKFGDS--ARKKMLVGVNVLADAVKATLGPKGRNV 38

[Close]

BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LISW6 (60 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1

Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAIS 150

[Close]

BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LISMO (60 kDa chaperonin OS=Listeria monocytogenes GN=groL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1

Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAIS 150

[Close]

BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LISMH (60 kDa chaperonin OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=groL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1

Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAIS 150

[Close]

BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LISMF (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1

Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAIS 150

The following BLAST results are available for this feature:

BLAST of CN185728 vs. ExPASy Swiss-Prot

BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH60_CALS8	4.128e-34	56.00	60 kDa chaperonin OS=Caldicellulosiruptor saccharo...	[more]
CH60_AZOVI	5.095e-34	52.07	60 kDa chaperonin OS=Azotobacter vinelandii GN=gro...	[more]
CH60_PSEAE	8.643e-34	50.41	60 kDa chaperonin OS=Pseudomonas aeruginosa GN=gro...	[more]
CH60_PSEAB	8.643e-34	50.41	60 kDa chaperonin OS=Pseudomonas aeruginosa (strai...	[more]
CH60_PSEA8	8.643e-34	50.41	60 kDa chaperonin OS=Pseudomonas aeruginosa (strai...	[more]
CH60_PSEA7	8.643e-34	50.41	60 kDa chaperonin OS=Pseudomonas aeruginosa (strai...	[more]
CH60_LISW6	1.201e-33	58.40	60 kDa chaperonin OS=Listeria welshimeri serovar 6...	[more]
CH60_LISMO	1.201e-33	58.40	60 kDa chaperonin OS=Listeria monocytogenes GN=gro...	[more]
CH60_LISMH	1.201e-33	58.40	60 kDa chaperonin OS=Listeria monocytogenes seroty...	[more]
CH60_LISMF	1.201e-33	58.40	60 kDa chaperonin OS=Listeria monocytogenes seroty...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC