CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LISMC (60 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAIS 150
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LISIN (60 kDa chaperonin OS=Listeria innocua GN=groL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33
Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANPV + RGIEK     + ELK +SK +E  E +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEGLKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAIS 150
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33
Identity = 71/124 (57.26%), Postives = 93/124 (75.00%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            +++ L P+    VLE KYGAP+IVNDGVT+AKE+ELED  EN GA+L+R+ AAKTND+ GDGTTT+ VLAQ LI EG+K VAAG NP+ + RG+EK  K +V  + +++K VE   +A VA VS
Sbjct:   26 VKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMREVAAKTNDVVGDGTTTATVLAQALIREGLKNVAAGTNPIALKRGMEKAIKTIVDGIAEVAKPVEGDMIAQVATVS 149
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33
Identity = 71/124 (57.26%), Postives = 93/124 (75.00%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVS 696
            +++ L P+    VLE KYGAP+IVNDGVT+AKE+ELED  EN GA+L+R+ AAKTND+ GDGTTT+ VLAQ LI EG+K VAAG NP+ + RG+EK  K +V  + +++K VE   +A VA VS
Sbjct:   26 VKITLGPKGRNVVLEKKYGAPQIVNDGVTIAKEIELEDAYENTGAQLMREVAAKTNDVVGDGTTTATVLAQALIREGLKNVAAGTNPIALKRGMEKAIKTIVDGIAEVAKPVEGDMIAQVATVS 149
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_HELMI (60 kDa chaperonin OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=groL PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 70/125 (56.00%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            + + L P+    VLE K+G+P I NDGVT+AKE+ELE+P+EN+GA+LV++ A KTND+AGDGTTT+ +LAQ +I EG+K VAAGANP+++ RGIEK  +  V+E+K ++K VE  E +A VAA+S
Sbjct:   26 VRVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELENPIENMGAQLVKEVATKTNDVAGDGTTTATILAQAIIREGMKNVAAGANPMVLKRGIEKAVEKAVAEIKAIAKPVESKEAIAQVAAIS 150
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_GEOTN (60 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groL PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 74/125 (59.20%), Postives = 95/125 (76.00%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK     V ELK +SK ++  E +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAIS 150
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_GEOKA (60 kDa chaperonin OS=Geobacillus kaustophilus GN=groL PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 74/125 (59.20%), Postives = 95/125 (76.00%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK     V ELK +SK ++  E +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAIS 150
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 71/125 (56.80%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L P+    VLE K+GAP I NDGVT+AKE++LEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ L+ EG+K V AGANP+ + RGIEK  + +V ELK+++K VE   ++A VAA+S
Sbjct:   27 VKITLGPKGRNVVLEKKFGAPVITNDGVTIAKEIDLEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQALVHEGMKHVVAGANPMYVKRGIEKAVEKVVEELKKIAKPVETKQDIAHVAAIS 151
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_DICT6 (60 kDa chaperonin OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=groL PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 71/125 (56.80%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L P+    VLE K+GAP I NDGVT+AKE++LEDP EN+GA+LV++ A+KTND+AGDGTTT+ VLAQ L+ EG+K V AGANP+ + RGIEK  + +V ELK+++K VE   ++A VAA+S
Sbjct:   27 VKITLGPKGRNVVLEKKFGAPVITNDGVTIAKEIDLEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQALVHEGMKHVVAGANPMYVRRGIEKAVEKVVEELKKIAKPVETKQDIAHVAAIS 151
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_BACP3 (60 kDa chaperonin OS=Bacillus PS3 GN=groL PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.569e-33
Identity = 74/125 (59.20%), Postives = 95/125 (76.00%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELEDP EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK     V ELK +SK ++  E +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAIS 150
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LISMC1.201e-3358.4060 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH60_LISIN1.201e-3358.4060 kDa chaperonin OS=Listeria innocua GN=groL PE=3... [more]
CH602_THEVL1.201e-3357.2660 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB1.201e-3357.2660 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH60_HELMI1.569e-3356.0060 kDa chaperonin OS=Heliobacterium modesticaldum ... [more]
CH60_GEOTN1.569e-3359.2060 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH60_GEOKA1.569e-3359.2060 kDa chaperonin OS=Geobacillus kaustophilus GN=g... [more]
CH60_DICTD1.569e-3356.8060 kDa chaperonin OS=Dictyoglomus turgidum (strain... [more]
CH60_DICT61.569e-3356.8060 kDa chaperonin OS=Dictyoglomus thermophilum (st... [more]
CH60_BACP31.569e-3359.2060 kDa chaperonin OS=Bacillus PS3 GN=groL PE=3 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
back to top