CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_AKKM8 (60 kDa chaperonin OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=groL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.909e-33
Identity = 67/121 (55.37%), Postives = 92/121 (76.03%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            L P     V++ K+G+P I  DGVTVAKE+ELEDP EN+GA+LVR+ ++KTND+AGDGTTT+ VLA+ +  EG++ V AGANP+ + RGI K + ++V ELK++SK V+ S E+A VA VS
Sbjct:   30 LGPAGRNVVIDKKFGSPLITKDGVTVAKEIELEDPFENMGAQLVREVSSKTNDVAGDGTTTATVLAESIYREGLRNVTAGANPISLQRGIMKAADSVVEELKKISKPVDSSKEVAQVATVS 150          

HSP 2 Score: 30.8018 bits (68), Expect = 1.909e-33
Identity = 18/38 (47.37%), Postives = 22/38 (57.89%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AK + F  D  A + L  GV ++A  V  TLGP GRNV
Sbjct:    2 AKQIQF--DETARQALLRGVEQIAKAVKSTLGPAGRNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_MYCPN (60 kDa chaperonin OS=Mycoplasma pneumoniae GN=groL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.909e-33
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = 1
Query:  343 PRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            P+    +L  K+  P I NDGVT+AKE+EL DP+ENIGAK++  AA  TND+AGDGTTT+ +LAQ +   GV+ V  GANPV + RGIE  S+ +++EL + SK++  + E+  VAA+S
Sbjct:   32 PKGQNVILGRKFSNPLITNDGVTIAKEIELTDPLENIGAKVISVAAVSTNDIAGDGTTTATILAQEMTNRGVEAVNNGANPVNVRRGIEDASQLIITELDKRSKKINTNEEIEQVAAIS 150          

HSP 2 Score: 42.743 bits (99), Expect = 1.909e-33
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AK+L F K+  A  KL  G+NKLAD V VT+GPKG+NV
Sbjct:    2 AKELVFGKN--ARNKLLAGINKLADAVKVTVGPKGQNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_ANATD (60 kDa chaperonin OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=groL PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33
Identity = 68/125 (54.40%), Postives = 100/125 (80.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P+IVNDGVT+AKE+ELEDP EN+GA++VR+ A+KTND+AGDGTTT+ VLAQ +I EG+K +AAGANP+++ +GI+K    +V E+++MSK+V   E +  VA++S
Sbjct:   27 VKVTLGPKGRNVVLEKKFGSPQIVNDGVTIAKEIELEDPFENMGAQIVREVASKTNDIAGDGTTTATVLAQAMIREGLKNIAAGANPMILRKGIQKAVDVVVEEIRKMSKKVRGKEDITYVASIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_MOOTA (60 kDa chaperonin 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33
Identity = 74/131 (56.49%), Postives = 97/131 (74.05%), Query Frame = 1
Query:  307 TSLQI*LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            T L   + + L PR    VLE K+GAP I NDGVT+AKEVELEDP+EN+GA LVR+ A+KTND+AGDGTTT+ VLAQ ++ EG+K VAAGANP+ + RGIEK   A+V  LK  ++ VE  + ++ VA++S
Sbjct:   20 TKLTEAVRVTLGPRGRNVVLEKKFGAPTITNDGVTIAKEVELEDPLENVGALLVREVASKTNDVAGDGTTTACVLAQAIVREGMKNVAAGANPMFMKRGIEKAVAAVVENLKAQARPVETKDSISQVASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33
Identity = 71/125 (56.80%), Postives = 102/125 (81.60%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            + + L P+    VLE K+GAP+I+NDGVT+AKE+ELE+ +EN GA+L+++ A+KTND+AGDGTTT+ VLAQ L+ EG+K VAAG+NP+ + RG+EKT + LV+EL++++K VE S+ +A VAAVS
Sbjct:   26 VRVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELENKLENTGAQLIKEVASKTNDVAGDGTTTACVLAQSLVKEGLKNVAAGSNPMNLKRGMEKTVRHLVAELEKVAKPVEGSQAIAQVAAVS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_SYNJA (60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.676e-33
Identity = 71/121 (58.68%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VLE K+GAP+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG+K VAAGANP+ + RGI+K  K LV ++ + ++ VEDS+ +A VAA+S
Sbjct:   30 LGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVSLIRQAASKTNDTAGDGTTTATVLAHAMVKEGLKNVAAGANPIALKRGIDKAVKFLVDKIAEHARPVEDSKAIAQVAAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_ROSCS (60 kDa chaperonin 2 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=groL2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.239e-33
Identity = 63/121 (52.07%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            L PR     +  K+G+P + +DGVTVAKEVEL+DP EN+GA+L+++AA+KTND+AGDGTTT+ VLAQ +I EG+K+VAAGANP+++ RG++K  +ALV+ +K+ +  ++   E+  VA +S
Sbjct:   30 LGPRGRNVAMGKKWGSPAVTHDGVTVAKEVELKDPFENMGAQLLKEAASKTNDVAGDGTTTATVLAQAMIDEGLKLVAAGANPMILKRGLDKGREALVARIKEQAISLKSRDEIRQVATIS 150          

HSP 2 Score: 32.7278 bits (73), Expect = 3.239e-33
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AK + FN+   A   L++GV+ +A  V  TLGP+GRNV
Sbjct:    2 AKQIIFNEQARAA--LKHGVDTMALAVKTTLGPRGRNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH601_SYNJB (60 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.495e-33
Identity = 70/121 (57.85%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG+K VAAGANP+ + RGI+K  K LV ++ + ++ VEDS+ +A VAA+S
Sbjct:   30 LGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVSLIRQAASKTNDTAGDGTTTATVLAHAMVKEGLKNVAAGANPIALKRGIDKAVKFLVDKIAEHARPVEDSKAIAQVAAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_DESRM (60 kDa chaperonin OS=Desulfotomaculum reducens (strain MI-1) GN=groL PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 71/125 (56.80%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    V+E K+GAP I NDGVT+A+E+ELED  EN+GA+LV++ A KTND+AGDGTTT+ VLAQ L+ EG+K VAAGANP++I RGIEK  +  V E+K M+K +E  E +A VA VS
Sbjct:   26 VKVTLGPKGRNVVIEKKFGAPTITNDGVTIAREIELEDNFENMGAQLVKEVATKTNDVAGDGTTTATVLAQALVREGLKNVAAGANPMIIKRGIEKAVEKAVEEIKAMAKPIESKEAIAQVATVS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_CARHZ (60 kDa chaperonin OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=groL PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33
Identity = 69/125 (55.20%), Postives = 98/125 (78.40%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P+I+NDGV++A+E+EL DPVEN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+++ +GIEK     V E+K ++K VE SE +A VAA+S
Sbjct:   27 VKVTLGPKGRNVVLEKKFGSPQIINDGVSIAREIELADPVENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVTAGANPMILRKGIEKAVAKAVEEIKAIAKPVETSEAIAQVAAIS 151          
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_AKKM81.909e-3355.3760 kDa chaperonin OS=Akkermansia muciniphila (stra... [more]
CH60_MYCPN1.909e-3350.4260 kDa chaperonin OS=Mycoplasma pneumoniae GN=groL... [more]
CH60_ANATD2.049e-3354.4060 kDa chaperonin OS=Anaerocellum thermophilum (st... [more]
CH602_MOOTA2.049e-3356.4960 kDa chaperonin 2 OS=Moorella thermoacetica (str... [more]
CH601_GLOVI2.049e-3356.8060 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH602_SYNJA2.676e-3358.6860 kDa chaperonin 2 OS=Synechococcus sp. (strain J... [more]
CH602_ROSCS3.239e-3352.0760 kDa chaperonin 2 OS=Roseiflexus castenholzii (s... [more]
CH601_SYNJB3.495e-3357.8560 kDa chaperonin 1 OS=Synechococcus sp. GN=groL1 ... [more]
CH60_DESRM4.564e-3356.8060 kDa chaperonin OS=Desulfotomaculum reducens (st... [more]
CH60_CARHZ5.961e-3355.2060 kDa chaperonin OS=Carboxydothermus hydrogenofor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
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