CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_ANADE (60 kDa chaperonin 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=groL2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 63/125 (50.40%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            +++ L P+    V+E  +G+P I  DGVTVAKE+ELE+  EN+GA++V++ A+KT+D+AGDGTTT+ VLAQ +  EG K+VAAG NP+ + RGI+K  +A+V ELK++SK  +D  E+A V  +S
Sbjct:   27 VKVTLGPKGRNVVIEKSFGSPTITKDGVTVAKEIELENKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQAIYREGSKLVAAGHNPMDVKRGIDKAVEAIVGELKKLSKPTKDHKEIAQVGIIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH601_CORJK (60 kDa chaperonin 1 OS=Corynebacterium jeikeium (strain K411) GN=groL1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 65/125 (52.00%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+GAP I NDGVT+A+E+ELEDP E IGA+LV++ A KT+D+AGDGTTT+ VLAQ L+ EG++ VAAG+NP+ I RGI+   + + +EL   +KE+E  E +A  A +S
Sbjct:   26 VKVTLGPKGRNVVLERKWGAPTITNDGVTIAREIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVREGLRNVAAGSNPMGIKRGIQAGVEKITAELLSHAKEIETQEQIAATAGIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_RHOBA (60 kDa chaperonin 2 OS=Rhodopirellula baltica GN=groL2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 7.372e-29
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  343 PRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            P     +++  +G P +  DGVTVAKE+ELED  EN+GAKLV + A KT+DLAGDGTTT+ VLA+ +  EG++ + AG+NP  I RGIEK  +A   +L +M + V    E+A V A+S
Sbjct:   32 PTGRNVIIDKSFGGPTVTKDGVTVAKEIELEDRFENMGAKLVIEVAQKTSDLAGDGTTTATVLARAIFKEGLRNIVAGSNPTAIRRGIEKAVEAACDQLVEMGRPVSGKQEVAHVGAIS 150          

HSP 2 Score: 32.7278 bits (73), Expect = 7.372e-29
Identity = 18/38 (47.37%), Postives = 23/38 (60.53%), Query Frame = 3
Query:  246 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AK L F  + +A  ++  GV KLA  V  T+GP GRNV
Sbjct:    2 AKQLLF--EDHARARMLAGVEKLAKAVATTMGPTGRNV 37          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 59/125 (47.20%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            +++ + PR    +++  +GAP I  DGV+VAKE+EL D + N+GA+LV++ A+KT D AGDGTTT+ VLA G+  EG++ + AGANP+ + RG++K + A++ ELK++SK+V D  E+A VA +S
Sbjct:   27 VKVTMGPRGRNVLIQKSFGAPSITKDGVSVAKEIELADAISNMGAQLVKEVASKTADAAGDGTTTATVLAHGIFKEGLRNITAGANPIEVKRGMDKATAAIIDELKKLSKKVNDKKEIAQVATIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_SULNB (60 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-1) GN=groL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 62/131 (47.33%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  307 TSLQI*LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            T L   +++ + PR    +++  +GAP I  DGV+VA+E+ELED +EN+GA+LV++ A+ T D AGDGTTT+ VLA  +  EG++ + AGANP+ + RG++K S A++ ELK++SKEV+D  E+A VA +S
Sbjct:   20 TKLADAVKVTMGPRGRNVLIQKSFGAPHITKDGVSVAREIELEDTLENMGAQLVKEVASNTADEAGDGTTTATVLAHSIFKEGLRNITAGANPIEVKRGMDKASAAIIEELKKISKEVKDKKEIAQVATIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_SHEPA (60 kDa chaperonin OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=groL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 63/125 (50.40%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VL+  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V+ELK +S+E  D++ +A V  +S
Sbjct:   27 VKVTLGPKGRNVVLDKSFGAPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVTEGLKAVAAGMNPMDLKRGIDKAVVAAVAELKNLSQECSDTKAIAQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_SHEAM (60 kDa chaperonin OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=groL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 65/125 (52.00%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE  +GAP I  DGV+VAKE+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A V ELK +S+E  DS+ +A V  +S
Sbjct:   27 VKVTLGPKGRNVVLEKSFGAPLITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVAAAVVELKALSQECADSKAIAQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_PSEU5 (60 kDa chaperonin OS=Pseudomonas stutzeri (strain A1501) GN=groL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 65/121 (53.72%), Postives = 89/121 (73.55%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VLE  +GAP I  DGV+VAKE+EL+D  EN+GA+LV+  A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K + A+V+ELKQ++K   DS+ +A V  +S
Sbjct:   31 LGPKGRNVVLEKSFGAPTITKDGVSVAKEIELKDRFENMGAQLVKDVASKANDEAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATIAIVAELKQLAKPCTDSKAIAQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_POLSJ (60 kDa chaperonin OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=groL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 63/125 (50.40%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    VLE  +GAP +  DGV+VAKE+EL+D ++N+GA++V++ A+KT+D+AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   ALV ELK+ SK    S E+A V ++S
Sbjct:   27 VKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDIAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGIDKAVTALVEELKKASKATTTSKEIAQVGSIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_PELCD (60 kDa chaperonin OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=groL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 63/125 (50.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            +++ L P+    V++  +GAP I  DGV+VAKE+ELE+  EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQG+  EGVK+V AG NP+ I RGI+K  +A V+ L+++SK ++D  E+A V  +S
Sbjct:   27 VKVTLGPKGRNVVIDRSFGAPLITKDGVSVAKEIELEEKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQGIYREGVKLVTAGHNPMEIKRGIDKAVEAAVAYLQELSKPIKDHKEIAQVGTIS 151          
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ANADE6.820e-2950.4060 kDa chaperonin 2 OS=Anaeromyxobacter dehalogena... [more]
CH601_CORJK6.820e-2952.0060 kDa chaperonin 1 OS=Corynebacterium jeikeium (s... [more]
CH602_RHOBA7.372e-2948.7460 kDa chaperonin 2 OS=Rhodopirellula baltica GN=g... [more]
CH60_WOLSU8.908e-2947.2060 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]
CH60_SULNB8.908e-2947.3360 kDa chaperonin OS=Sulfurovum sp. (strain NBC37-... [more]
CH60_SHEPA8.908e-2950.4060 kDa chaperonin OS=Shewanella pealeana (strain A... [more]
CH60_SHEAM8.908e-2952.0060 kDa chaperonin OS=Shewanella amazonensis (strai... [more]
CH60_PSEU58.908e-2953.7260 kDa chaperonin OS=Pseudomonas stutzeri (strain ... [more]
CH60_POLSJ8.908e-2950.4060 kDa chaperonin OS=Polaromonas sp. (strain JS666... [more]
CH60_PELCD8.908e-2950.4060 kDa chaperonin OS=Pelobacter carbinolicus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
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