CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_XANOP (60 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVS 696
            L P+    VLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +S
Sbjct:   31 LGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTIS 151
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_XANOM (60 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVS 696
            L P+    VLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +S
Sbjct:   31 LGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTIS 151
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_XANCP (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVS 696
            L P+    VLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +S
Sbjct:   31 LGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISKPTTDDKAIAQVGTIS 151
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_XANCH (60 kDa chaperonin OS=Xanthomonas campestris pv. phaseoli GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVS 696
            L P+    VLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +S
Sbjct:   31 LGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTIS 151
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_XANC8 (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain 8004) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVS 696
            L P+    VLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +S
Sbjct:   31 LGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISKPTTDDKAIAQVGTIS 151
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_XANC5 (60 kDa chaperonin OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVS 696
            L P+    VLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +S
Sbjct:   31 LGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTIS 151
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_XANAC (60 kDa chaperonin OS=Xanthomonas axonopodis pv. citri GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSK-EVEDSELADVAAVS 696
            L P+    VLE  +GAP I  DGV+VAKE+EL D  EN+GA++V++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI++  KA V ELK +SK   +D  +A V  +S
Sbjct:   31 LGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTIS 151
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            +++ L PR    +LE K+G+P +  DGV+VAKE+EL DP EN+ A+LV++ A+KT D+AGDGTTT+ VL Q +  EG+K +A+GANP+ + RGI++  K +V ELK++SK V    E+  VA +S
Sbjct:   27 VKVTLGPRGREVILEKKWGSPVVTKDGVSVAKEIELTDPYENMAAQLVKEVASKTADVAGDGTTTATVLTQAIYEEGLKAIASGANPIYVKRGIDEAVKIIVEELKKISKPVTGRKEIEQVATIS 151
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_STAS1 (60 kDa chaperonin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 61/125 (48.80%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            +++ + P+    VL+ +Y +P I NDGVT+AKE+ELEDP EN+GAKLV++ A KTN++AGDGTTT+ VLAQ +I EG+K V +GANPV + +GI+K  +  +  L ++S+ V++ +E+A V ++S
Sbjct:   26 VKVTIGPKGRNVVLDKEYTSPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVEVAIEALHEISQNVDNKNEIAQVGSIS 150
[Close]
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_PYRSA (60 kDa chaperonin, chloroplastic OS=Pyrenomonas salina GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 64/126 (50.79%), Postives = 93/126 (73.81%), Query Frame = 1 
Query:  325 LELPLVPRAGMFVLES-KYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            + + L P+    VLES KYG P+IVNDGVT+AKE+ELED +EN G  L+RQAA+KTND+AGDGTTT+ VLA  ++ +G+K V   +  + I RGIEK ++ ++S++ + S+ VED++ +  VAA+S
Sbjct:   52 VSVTLGPKGRNVVLESGKYGPPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAHAMVKQGMKNVRCRSKSIAIKRGIEKATQFVISQIAEYSRPVEDTKSITQVAAIS 177
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_XANOP1.984e-2854.5560 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae... [more]
CH60_XANOM1.984e-2854.5560 kDa chaperonin OS=Xanthomonas oryzae pv. oryzae... [more]
CH60_XANCP1.984e-2854.5560 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]
CH60_XANCH1.984e-2854.5560 kDa chaperonin OS=Xanthomonas campestris pv. ph... [more]
CH60_XANC81.984e-2854.5560 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]
CH60_XANC51.984e-2854.5560 kDa chaperonin OS=Xanthomonas campestris pv. ve... [more]
CH60_XANAC1.984e-2854.5560 kDa chaperonin OS=Xanthomonas axonopodis pv. ci... [more]
CH60_SULSY1.984e-2848.8060 kDa chaperonin OS=Sulfurihydrogenibium sp. (str... [more]
CH60_STAS11.984e-2848.8060 kDa chaperonin OS=Staphylococcus saprophyticus ... [more]
CH60_PYRSA1.984e-2850.7960 kDa chaperonin, chloroplastic OS=Pyrenomonas sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
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