CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_NITEU (60 kDa chaperonin OS=Nitrosomonas europaea GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 64/125 (51.20%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    VLE  YGAP I  DGV+VAKE+EL+D  EN+GA++V++ A+KT+D AGDGTTT+ VLAQ ++ EG++ VAAG NP+ + RGIEK     V ELK++SK    S E+A V ++S
Sbjct:   27 VKVTLGPKGRNVVLERSYGAPTITKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDTAGDGTTTATVLAQSIVKEGMRYVAAGMNPMDLKRGIEKAVTGAVEELKKLSKPCSTSKEIAQVGSIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_NEIFL (60 kDa chaperonin OS=Neisseria flavescens GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 63/125 (50.40%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            + + L P+    VL+  +G P I  DGV+VAKE+EL+D  EN+GA++V++ A+KTND+AGDGTTT+ VLAQ ++AEG+K V AG NP  + RGI+K   ALV ELK ++K  + S E+A V ++S
Sbjct:   27 VRVTLGPKGRNVVLDRAFGGPHITKDGVSVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVDELKNIAKPCDTSKEIAQVGSIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_HERA2 (60 kDa chaperonin OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 59/121 (48.76%), Postives = 92/121 (76.03%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            L PR     ++ K+G+P + +DGVTVAKE+EL+DP EN+GA+L+ +AA KTND+AGDGTTT+ VLAQ ++ EG++ VAAGAN ++I RG++K +  L+  ++ ++K V D ++++ VA +S
Sbjct:   30 LGPRGRNVAIDKKFGSPTVTHDGVTVAKEIELKDPFENMGARLLVEAATKTNDVAGDGTTTATVLAQAIVHEGLRQVAAGANSMMIKRGLDKGTAVLLQAIRDLAKPVNDRTDISSVATIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_HAEIN (60 kDa chaperonin OS=Haemophilus influenzae GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 62/125 (49.60%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    +L+  +GAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A+VSELK +SK  E + E+  V  +S
Sbjct:   27 VKVTLGPKGRHVILDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVSAVVSELKNLSKPCETAKEIEQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_HAEIE (60 kDa chaperonin OS=Haemophilus influenzae (strain PittEE) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 62/125 (49.60%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    +L+  +GAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A+VSELK +SK  E + E+  V  +S
Sbjct:   27 VKVTLGPKGRNVILDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVSAVVSELKNLSKPCETAKEIEQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_HAEI8 (60 kDa chaperonin OS=Haemophilus influenzae (strain 86-028NP) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 62/125 (49.60%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    +L+  +GAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A+VSELK +SK  E + E+  V  +S
Sbjct:   27 VKVTLGPKGRNVILDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVSAVVSELKNLSKPCETAKEIEQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_GEOLS (60 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groL PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 62/125 (49.60%), Postives = 95/125 (76.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            +++ L P+    ++E  +G+P I  DGV+VAKEVELE+  EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQ +  +G K+VAAG NP+ I RGI+K  +A+V+EL+++SK ++D  E+A V  +S
Sbjct:   27 VKVTLGPKGRNVIIEKSFGSPLITKDGVSVAKEVELENKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYKQGSKLVAAGHNPMEIKRGIDKAVEAIVAELQKISKPIKDHKEIAQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH603_NITWN (60 kDa chaperonin 3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL3 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 64/125 (51.20%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    V+E  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+ A+KTNDLAGDGTTT+ VLAQ ++ EG K VAAG NP+ + RGI+    A+V ++ + +K V  S E+A V  +S
Sbjct:   27 VKVTLGPKGRNVVIERSFGAPRITKDGVTVAKEIELEDRFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIGKRAKAVASSAEVAQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_VIBPA (60 kDa chaperonin 2 OS=Vibrio parahaemolyticus GN=groL2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 63/125 (50.40%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VL+  YGAP I  DGV+VAKE+EL+D  EN+GA++V+Q A+K ND AGDGTTT+ VLAQ  I EG+K VA+G NP+ + RGI+K ++A V +L++MSK   D E +  V ++S
Sbjct:   27 VKVTLGPKGRNVVLDKSYGAPTITKDGVSVAKEIELKDKFENMGAQMVKQVASKANDEAGDGTTTATVLAQSFINEGLKAVASGMNPMDLKRGIDKATEAAVEKLREMSKPCSDKESITQVGSIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_SALAI (60 kDa chaperonin 2 OS=Salinispora arenicola (strain CNS-205) GN=groL2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 65/125 (52.00%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            +++ L PR    VL+ K+GAP I NDGVT+AKE+EL +P EN+GA+LV++ A KTND+AGDGTTT+ VLAQ L+ EG++ VAAGANP  + RGI+  +  +  EL   + +V D + +A VA VS
Sbjct:   26 VKVTLGPRGRNVVLDKKFGAPTITNDGVTIAKEIELTNPYENLGAQLVKEVATKTNDVAGDGTTTATVLAQALVREGLRNVAAGANPTGLKRGIDAAATKVSEELLGKAVDVSDKAAIAHVATVS 150          
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NITEU1.984e-2851.2060 kDa chaperonin OS=Nitrosomonas europaea GN=groL... [more]
CH60_NEIFL1.984e-2850.4060 kDa chaperonin OS=Neisseria flavescens GN=groL ... [more]
CH60_HERA21.984e-2848.7660 kDa chaperonin OS=Herpetosiphon aurantiacus (st... [more]
CH60_HAEIN1.984e-2849.6060 kDa chaperonin OS=Haemophilus influenzae GN=gro... [more]
CH60_HAEIE1.984e-2849.6060 kDa chaperonin OS=Haemophilus influenzae (strai... [more]
CH60_HAEI81.984e-2849.6060 kDa chaperonin OS=Haemophilus influenzae (strai... [more]
CH60_GEOLS1.984e-2849.6060 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]
CH603_NITWN1.984e-2851.2060 kDa chaperonin 3 OS=Nitrobacter winogradskyi (s... [more]
CH602_VIBPA1.984e-2850.4060 kDa chaperonin 2 OS=Vibrio parahaemolyticus GN=... [more]
CH602_SALAI1.984e-2852.0060 kDa chaperonin 2 OS=Salinispora arenicola (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
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