CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_MANSM (60 kDa chaperonin OS=Mannheimia succiniciproducens (strain MBEL55E) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 63/125 (50.40%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    VL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A+V+ELK +SK  E S E+  V  +S
Sbjct:   27 VKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVAAVVTELKALSKPCETSKEIEQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_MAGSA (60 kDa chaperonin OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 62/125 (49.60%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVS 696
            +++ L P+    V+E  +GAP+I  DGVTVAKE+EL D  EN+GA++VR+ A+KT DLAGDGTTT+ VLAQ ++ EGVK VAAG NP+ + RG++    A+V+++K  S++V  ++E+A V  +S
Sbjct:   27 VKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELADKFENMGAQMVREVASKTADLAGDGTTTATVLAQAIVREGVKAVAAGLNPMDLKRGVDLAVAAVVADVKSRSRKVATNAEIAQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_LEPCP (60 kDa chaperonin OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 63/125 (50.40%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    VLE  +GAP +  DGV+VAKE+EL+D ++N+GA++V++ A+KT+D AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   ALV+ELK+ SK    S E+A V ++S
Sbjct:   27 VKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQAIVREGMKYVAAGMNPMDLKRGIDKAVHALVAELKKASKATTTSKEIAQVGSIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_GEOMG (60 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 61/125 (48.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            +++ L P+    ++E  +G+P I  DGVTVAKE+ELED  EN+GA+LV++ A+KT+D+AGDGTTT+ VLAQ +  +G K+VAAG NP+ I RGI+   + +V+EL+++SK ++D  E+A V  +S
Sbjct:   26 VKVTLGPKGRNVIIEKSFGSPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGSKLVAAGHNPMEIKRGIDSAVETIVAELQKISKPIKDHKEIAQVGTIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_DESDA (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 61/125 (48.80%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            +++ L P+     +E  +GAP I  DGVTVAKE+EL D  EN+GA+LV++ A+KT+D AGDGTTT+ +LAQ +  EGVK+VAAG NP+ I RGI+K  + L++EL  ++K   D  E+A +  +S
Sbjct:   27 VKVTLGPKGRNVAIEKSFGAPVITKDGVTVAKEIELSDKFENMGAQLVKEVASKTSDAAGDGTTTATILAQAIYREGVKLVAAGRNPMAIKRGIDKAVEGLITELANLAKPTRDQKEIAQIGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_ACTPL (60 kDa chaperonin OS=Actinobacillus pleuropneumoniae GN=groL PE=3 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    VL+  YGAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A+V ELK +SK  E S E+  V  +S
Sbjct:   27 VKVTLGPKGRNVVLDKAYGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVVAVVEELKAISKPCETSKEIEQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_ACTPJ (60 kDa chaperonin OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    VL+  YGAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A+V ELK +SK  E S E+  V  +S
Sbjct:   27 VKVTLGPKGRNVVLDKAYGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVVAVVEELKAISKPCETSKEIEQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_ACTP7 (60 kDa chaperonin OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    VL+  YGAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A+V ELK +SK  E S E+  V  +S
Sbjct:   27 VKVTLGPKGRNVVLDKAYGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVVAVVEELKAISKPCETSKEIEQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_ACTP2 (60 kDa chaperonin OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=groL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDS-ELADVAAVS 696
            +++ L P+    VL+  YGAP I  DGV+VA+E+ELED  EN+GA++V++ A+K ND AGDGTTT+ VLAQ ++ EG+K VAAG NP+ + RGI+K   A+V ELK +SK  E S E+  V  +S
Sbjct:   27 VKVTLGPKGRNVVLDKAYGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVVAVVEELKAISKPCETSKEIEQVGTIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH605_RHIME (60 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 60/125 (48.00%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVS 696
            +++ L P+    V++  +GAP+I  DGV+VAKE+ELED  EN+GA+++R+ A++TNDLAGDGTTT+ VLAQ ++ EG K VA+G NP+ + RGI+    A+V ELK  ++++ ++SE+A V  +S
Sbjct:   27 VKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMLREVASRTNDLAGDGTTTATVLAQAIVREGAKAVASGMNPMDLKRGIDLAVDAVVKELKNNARKISKNSEIAQVGTIS 151          
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_MANSM2.592e-2850.4060 kDa chaperonin OS=Mannheimia succiniciproducens... [more]
CH60_MAGSA2.592e-2849.6060 kDa chaperonin OS=Magnetospirillum magneticum (... [more]
CH60_LEPCP2.592e-2850.4060 kDa chaperonin OS=Leptothrix cholodnii (strain ... [more]
CH60_GEOMG2.592e-2848.8060 kDa chaperonin OS=Geobacter metallireducens (st... [more]
CH60_DESDA2.592e-2848.8060 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_ACTPL2.592e-2851.2060 kDa chaperonin OS=Actinobacillus pleuropneumoni... [more]
CH60_ACTPJ2.592e-2851.2060 kDa chaperonin OS=Actinobacillus pleuropneumoni... [more]
CH60_ACTP72.592e-2851.2060 kDa chaperonin OS=Actinobacillus pleuropneumoni... [more]
CH60_ACTP22.592e-2851.2060 kDa chaperonin OS=Actinobacillus pleuropneumoni... [more]
CH605_RHIME2.592e-2848.0060 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
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