CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_METVS (60 kDa chaperonin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=groL PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 66/125 (52.80%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L P+    V+E  YG+P I NDGVT+AKE+ELEDP EN+GA+L+++ A K ND+AGDGTTT+ VLAQ ++ EG+K++ AG+NPV + RGIEK +K  VS L+  SK++  +SE+A VA++S
Sbjct:   26 VKVTLGPKGRNVVIEKSYGSPLITNDGVTIAKEIELEDPFENMGAQLIKEVATKANDVAGDGTTTATVLAQAMVKEGLKMITAGSNPVFVKRGIEKATKKAVSILETKSKKIAGNSEIAQVASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_BACHD (60 kDa chaperonin OS=Bacillus halodurans GN=groL PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 69/125 (55.20%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V +GANP++I +GIEK ++  V EL ++SK +E  + +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVTSGANPMVIRKGIEKATQVAVEELSKISKPIEGKDSIAQVAAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 68/121 (56.20%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VLE K+GAP+IVNDGVT+AKE+ELED VEN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGANP+ + RGI+K +  LV ++ + ++++EDS+ +A V A+S
Sbjct:   30 LGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHVENTGVSLIRQAASKTNDAAGDGTTTATVLAHAMVKEGLRNVAAGANPIALKRGIDKAAGFLVEKIAEHARQIEDSKAIAQVGAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_DESHY (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groL PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 69/125 (55.20%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            + + L P+    VL+ K+GAP I NDGVT+A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK  +++V ++K  +K +E  E +A VA++S
Sbjct:   26 VRVTLGPKGRNVVLDKKFGAPLITNDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVAAGANPMGIKRGIEKAVESVVDDIKTNAKPIESKESIAQVASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_DESHD (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groL PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 69/125 (55.20%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            + + L P+    VL+ K+GAP I NDGVT+A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTT+ VLAQ +I EG+K VAAGANP+ I RGIEK  +++V ++K  +K +E  E +A VA++S
Sbjct:   26 VRVTLGPKGRNVVLDKKFGAPLITNDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVAAGANPMGIKRGIEKAVESVVEDIKTNAKPIESKESIAQVASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_XYLFM (60 kDa chaperonin OS=Xylella fastidiosa (strain M12) GN=groL PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.490e-32
Identity = 64/121 (52.89%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVS 696
            L P+    VL+  +G+P I  DGV+VAKE+EL D  EN+GA+++++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI+K   A V+ELK++SK   +D  +A VA +S
Sbjct:   31 LGPKGRNVVLDKNFGSPIITKDGVSVAKEIELADKFENMGAQMLKEVASKTNDHAGDGTTTATVLAQALIREGCKAVAAGMNPMDLKRGIDKAVIAAVTELKKISKPTSDDKAIAQVATIS 151          

HSP 2 Score: 36.5798 bits (83), Expect = 3.490e-32
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 3
Query:  243 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AAK++ F++   A  ++  GVN LA+ V  TLGPKGRNV
Sbjct:    2 AAKEIIFSEK--ARSRMVYGVNLLANAVKATLGPKGRNV 38          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_SYNE7 (60 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groL PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 68/121 (56.20%), Postives = 93/121 (76.86%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGAN +L+ RGI+K +  LV ++K  ++ VEDS+ +A V A+S
Sbjct:   30 LGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAVVKEGLRNVAAGANAILLKRGIDKATNFLVEQIKSHARPVEDSKSIAQVGAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_SYMTH (60 kDa chaperonin OS=Symbiobacterium thermophilum GN=groL PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 67/125 (53.60%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L PR    VL+ K+GAP + NDGVT+A+E+ELEDP EN+GA+LV++ A KTND+AGDGTTTS VLAQ ++ EG+K V  GANP+++ RGIEK  +  V EL++ +  VE ++ +A+VAA+S
Sbjct:   27 VKVTLGPRGRNVVLDKKFGAPAVANDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTSTVLAQAIVKEGLKNVTGGANPMILKRGIEKAVQVAVEELRKQAIPVETNKAIAEVAAIS 151          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_BACWK (60 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groL PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 71/125 (56.80%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ + +GIEK   A + ELK +SK +E  S +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVTAAIEELKAISKPIEGKSSIAQVAAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_BACHK (60 kDa chaperonin OS=Bacillus thuringiensis subsp. konkukian GN=groL PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ + +GIEK   A V ELK +SK +E  S +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVVAAVEELKTISKPIEGKSSIAQVAAIS 150          
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_METVS2.265e-3252.8060 kDa chaperonin OS=Methanococcus vannielii (stra... [more]
CH60_BACHD2.265e-3255.2060 kDa chaperonin OS=Bacillus halodurans GN=groL P... [more]
CH602_TRIEI2.265e-3256.2060 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH60_DESHY2.958e-3255.2060 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH60_DESHD2.958e-3255.2060 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH60_XYLFM3.490e-3252.8960 kDa chaperonin OS=Xylella fastidiosa (strain M1... [more]
CH60_SYNE73.864e-3256.2060 kDa chaperonin OS=Synechococcus elongatus (stra... [more]
CH60_SYMTH3.864e-3253.6060 kDa chaperonin OS=Symbiobacterium thermophilum ... [more]
CH60_BACWK3.864e-3256.8060 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]
CH60_BACHK3.864e-3257.6060 kDa chaperonin OS=Bacillus thuringiensis subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
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