CN185728

Overview
NameCN185728
Unique NameCN185728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_BACAN (60 kDa chaperonin OS=Bacillus anthracis GN=groL PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ + +GIEK   A V ELK +SK +E  S +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVVAAVEELKTISKPIEGKSSIAQVAAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_BACAH (60 kDa chaperonin OS=Bacillus thuringiensis (strain Al Hakam) GN=groL PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ + +GIEK   A V ELK +SK +E  S +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVVAAVEELKTISKPIEGKSSIAQVAAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_BACAC (60 kDa chaperonin OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=groL PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ + +GIEK   A V ELK +SK +E  S +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVVAAVEELKTISKPIEGKSSIAQVAAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_BACAA (60 kDa chaperonin OS=Bacillus anthracis (strain A0248) GN=groL PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVE-DSELADVAAVS 696
            +++ L P+    VLE K+G+P I NDGVT+AKE+ELED  EN+GAKLV + A+KTND+AGDGTTT+ VLAQ +I EG+K V AGANP+ + +GIEK   A V ELK +SK +E  S +A VAA+S
Sbjct:   26 VKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGLRKGIEKAVVAAVEELKTISKPIEGKSSIAQVAAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH601_SYNP6 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL1 PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 68/121 (56.20%), Postives = 93/121 (76.86%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            L P+    VLE K+GAP+I+NDGVT+AKE+ELED +EN G  L+RQAA+KTND AGDGTTT+ VLA  ++ EG++ VAAGAN +L+ RGI+K +  LV ++K  ++ VEDS+ +A V A+S
Sbjct:   30 LGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAVVKEGLRNVAAGANAILLKRGIDKATNFLVEQIKSHARPVEDSKSIAQVGAIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 66/125 (52.80%), Postives = 96/125 (76.80%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVS 696
            +++ + P+    +LE K+GAP+IVNDGVT+AKE+EL DP+EN GA+L+R+ A KTND+AGDGTTT+ +LAQ ++ EG+K ++AGANPV + RGIEKT+  LV ++   +K VE    +A+VA +S
Sbjct:   26 VKVTIGPKGRNVLLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVATKTNDVAGDGTTTATILAQSMVQEGLKNISAGANPVALRRGIEKTTAYLVEQIAAQAKPVEGRKNIAEVATIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_THEBR (60 kDa chaperonin OS=Thermoanaerobacter brockii GN=groL PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 67/125 (53.60%), Postives = 97/125 (77.60%), Query Frame = 1
Query:  325 LELPLVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVS 696
            +++ L PR    VL+ KYG+P + NDGVT+A+E+ELEDP EN GA+L+++AA KTND+AGDGTTT+ +LAQ ++ EG+K +AAGANP+L+ RGI K   A V  LK++SK +++ E +A VA++S
Sbjct:   26 VKVTLGPRGRNVVLDKKYGSPTVTNDGVTIAREIELEDPFENQGAQLLKEAATKTNDIAGDGTTTATLLAQAMVREGLKNLAAGANPMLLRRGIAKAVDAAVEGLKRISKPIDNKESIAHVASIS 150          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_XYLFT (60 kDa chaperonin OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=groL PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.918e-32
Identity = 64/121 (52.89%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVS 696
            L P+    VL+  +G+P I  DGV+VAKE+EL D  EN+GA+++++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI+K   A V+ELK++SK   +D  +A VA +S
Sbjct:   31 LGPKGRHVVLDKSFGSPIITKDGVSVAKEIELADKFENMGAQMLKEVASKTNDHAGDGTTTATVLAQALIREGCKAVAAGMNPMDLKRGIDKAVIAAVTELKKISKPTSDDKAIAQVATIS 151          

HSP 2 Score: 35.8094 bits (81), Expect = 5.918e-32
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 3
Query:  243 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AAK++ F++   A  ++ +GVN LA+ V  TLGPKGR+V
Sbjct:    2 AAKEIIFSEK--ARSRMVHGVNLLANAVKATLGPKGRHV 38          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_XYLFA (60 kDa chaperonin OS=Xylella fastidiosa GN=groL PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.918e-32
Identity = 64/121 (52.89%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVS 696
            L P+    VL+  +G+P I  DGV+VAKE+EL D  EN+GA+++++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI+K   A V+ELK++SK   +D  +A VA +S
Sbjct:   31 LGPKGRHVVLDKSFGSPIITKDGVSVAKEIELADKFENMGAQMLKEVASKTNDHAGDGTTTATVLAQALIREGCKAVAAGMNPMDLKRGIDKAVIAAVTELKKISKPTSDDKAIAQVATIS 151          

HSP 2 Score: 35.8094 bits (81), Expect = 5.918e-32
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 3
Query:  243 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AAK++ F++   A  ++ +GVN LA+ V  TLGPKGR+V
Sbjct:    2 AAKEIIFSEK--ARSRMVHGVNLLANAVKATLGPKGRHV 38          
BLAST of CN185728 vs. ExPASy Swiss-Prot
Match: CH60_XYLF2 (60 kDa chaperonin OS=Xylella fastidiosa (strain M23) GN=groL PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.918e-32
Identity = 64/121 (52.89%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  337 LVPRAGMFVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEV-EDSELADVAAVS 696
            L P+    VL+  +G+P I  DGV+VAKE+EL D  EN+GA+++++ A+KTND AGDGTTT+ VLAQ LI EG K VAAG NP+ + RGI+K   A V+ELK++SK   +D  +A VA +S
Sbjct:   31 LGPKGRHVVLDKSFGSPIITKDGVSVAKEIELADKFENMGAQMLKEVASKTNDHAGDGTTTATVLAQALIREGCKAVAAGMNPMDLKRGIDKAVIAAVTELKKISKPTSDDKAIAQVATIS 151          

HSP 2 Score: 35.8094 bits (81), Expect = 5.918e-32
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 3
Query:  243 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNV 359
            AAK++ F++   A  ++ +GVN LA+ V  TLGPKGR+V
Sbjct:    2 AAKEIIFSEK--ARSRMVHGVNLLANAVKATLGPKGRHV 38          
The following BLAST results are available for this feature:
BLAST of CN185728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BACAN3.864e-3257.6060 kDa chaperonin OS=Bacillus anthracis GN=groL PE... [more]
CH60_BACAH3.864e-3257.6060 kDa chaperonin OS=Bacillus thuringiensis (strai... [more]
CH60_BACAC3.864e-3257.6060 kDa chaperonin OS=Bacillus anthracis (strain CD... [more]
CH60_BACAA3.864e-3257.6060 kDa chaperonin OS=Bacillus anthracis (strain A0... [more]
CH601_SYNP63.864e-3256.2060 kDa chaperonin 1 OS=Synechococcus sp. (strain A... [more]
CH601_SYNJA3.864e-3252.8060 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH60_THEBR5.046e-3253.6060 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH60_XYLFT5.918e-3252.8960 kDa chaperonin OS=Xylella fastidiosa (strain Te... [more]
CH60_XYLFA5.918e-3252.8960 kDa chaperonin OS=Xylella fastidiosa GN=groL PE... [more]
CH60_XYLF25.918e-3252.8960 kDa chaperonin OS=Xylella fastidiosa (strain M2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185728 ID=CN185728; Name=CN185728; organism=Citrus sinensis; type=EST; length=698bp
AGGCTCTTTAAACCCTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTA
AACGAATAAATGGCGTCGACTTTCACTGCCATGTCTTCCATTAGCTCCAT
GATTGCTCCTAATGGACGAATGACTGATAAGAAGCTTGCATCTTCTTCGA
ACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGA
CAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAA
GGACTTGCATTTCAACAAGGATGGATATGCCATGAAGAAACTTCAAAATG
GTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGC
AGGAATGTTTGTTCTAGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATG
ATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAAC
ATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACTAATGACTTGGC
TGGTGATGGAACAACAACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTG
AAGGTGTTAAGGTCGTGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGA
GGCATTGAGAAGACATCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTC
AAAAGAGGTTGAAGATAGTGAACTTGCCGATGTAGCAGCTGTTAGTGC
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