CN185724

Overview
NameCN185724
Unique NameCN185724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1966 contig Csv1_Contig1966:100..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHP_ASPNG (Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 7.936e-72
Identity = 130/198 (65.66%), Postives = 160/198 (80.81%), Query Frame = 2
Query:   80 KIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            KIKV +P+V +DGDEMTR+ W+ I++KLI P+L++D+KY+DLGL  RD TDD+VTVE+A+A  KY V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GTVFREPII   +PRL+PGW KPI IGRHAFGDQYRATD VI GPGKL+LV+ P   + +T ++VY+F G GG+A + YNTDES+R  A AS   A
Sbjct:   92 KIKVKNPVVELDGDEMTRIIWQEIREKLILPYLDVDLKYYDLGLEYRDQTDDQVTVEAAEAIKKYGVGVKCATITPDEARVEEFKLKKMWLSPNGTIRNILGGTVFREPIIIPAIPRLVPGWNKPIIIGRHAFGDQYRATDRVIPGPGKLELVYTPVNGEPET-VKVYDFQG-GGIAQTQYNTDESIRGFAHASFQMA 287          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHP_SCHPO (Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe GN=idp1 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.354e-71
Identity = 127/202 (62.87%), Postives = 161/202 (79.70%), Query Frame = 2
Query:   71 AFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGK-DEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            +FQKI V +P+V MDGDEMTRV WK I++KL+ P++++ + Y+DLG+  RD T+D++TV++A+A LK +V IKCATITPDEARVKE+ LK+MWKSPNGTIRNILNGTVFREPI+ KN+P+ IPGWT PICIGRHAFGDQY++TD V  GPGKL+L F P+G    K    VY F G  GVA+S+YNTD+S+R  A +S   A
Sbjct:   10 SFQKITVKNPVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKNDVGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNG-SGVAMSMYNTDDSIRGFAHSSFQMA 210          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHH_YEAST (Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae GN=IDP3 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.267e-69
Identity = 125/198 (63.13%), Postives = 155/198 (78.28%), Query Frame = 2
Query:   80 KIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            KIKV HPIV MDGDE TRV WK IK+KLI P+L++D+KY+DL +  RD T+D+VT +S+ ATLKY VA+KCATITPDEAR+KEF LK+MWKSPNGTIRNIL GTVFREPII   +PRL+P W KPI IGRHAFGDQYRATD  I+  GKL+L F  +   E   L+VY F   GG+A++++NT++S++  A+AS   A
Sbjct:    3 KIKVVHPIVEMDGDEQTRVIWKLIKEKLILPYLDVDLKYYDLSIQERDRTNDQVTKDSSYATLKYGVAVKCATITPDEARMKEFNLKEMWKSPNGTIRNILGGTVFREPIIIPKIPRLVPHWEKPIIIGRHAFGDQYRATDIKIKKAGKLRLQFSSDDGKENIDLKVYEFPKSGGIAMAMFNTNDSIKGFAKASFELA 200          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDH2_CANTR (Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis GN=IDP2 PE=1 SV=3)

HSP 1 Score: 260.766 bits (665), Expect = 4.815e-69
Identity = 126/199 (63.32%), Postives = 152/199 (76.38%), Query Frame = 2
Query:   77 QKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            QKI V +PIV MDGDEMTR+ W+ IKDKLI P+L +D+KY+DLG+  RD TDDKVT ++A+A L+Y V +KCATITPDEARVKEF LK+MW SPNGT+RN++ GTVFREPI+  N+PR++P W KPI IGRHAFGDQY+ATD VI   G LKLVF P+   E     VY F G  GVALS+YNTD S+   AE+S   A
Sbjct:    5 QKITVKNPIVEMDGDEMTRIIWQFIKDKLILPYLNVDLKYYDLGIEYRDKTDDKVTTDAAEAILQYGVGVKCATITPDEARVKEFNLKKMWLSPNGTLRNVIGGTVFREPIVIDNIPRIVPSWEKPIIIGRHAFGDQYKATDVVIPAAGDLKLVFKPKDGGEVQEFPVYQFDGP-GVALSMYNTDASITDFAESSFQLA 202          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDH1_CANTR (Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.073e-68
Identity = 125/198 (63.13%), Postives = 155/198 (78.28%), Query Frame = 2
Query:   80 KIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            KIKV +PIV +DGDEMTR+ W+ IKD+LI P+L++D+KY+DLG+ +RDATDD++T+++A A  +Y V +KCATITPDEARVKEF LK+MW SPNGTIRNIL GTVFRE II   +PRLIPGW KPI IGRHAFGDQY+ATD VI  PG+L+L F P    E    +VY++TG  GV L++YNTDES+   A AS   A
Sbjct:   29 KIKVKNPIVELDGDEMTRIIWQKIKDQLILPYLDVDLKYYDLGIESRDATDDQITIDAANAIKEYGVGVKCATITPDEARVKEFHLKKMWLSPNGTIRNILGGTVFRESIIIPCIPRLIPGWEKPIVIGRHAFGDQYKATDLVINEPGRLELRFTPASGGEAQTQKVYDYTGP-GVGLAMYNTDESITGFAHASFKMA 225          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_BOVIN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.390e-68
Identity = 120/191 (62.83%), Postives = 150/191 (78.53%), Query Frame = 2
Query:  101 IV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            +V M GDEMTR+ W+ IK+KLIFP++ELD+  +DLG+ NRDAT+D+VT ++A+A  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P     KT   V+NFT  GGVA+ +YN D+S+   A +S   A
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPSDGSPKTVYLVHNFTESGGVAMGMYNQDKSIEDFAHSSFQMA 200          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_YEAST (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae GN=IDP2 PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 2.023e-67
Identity = 120/198 (60.61%), Postives = 154/198 (77.78%), Query Frame = 2
Query:   80 KIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            KIKVA+PIV MDGDE TR+ W  I+DKL+ P+L++D+KY+DL +  RD T+D+VTV+SA ATLKY VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPII   +PRL+P W KPI IGRHAFGDQY+ATD ++   G+L+LV+  +       L+V+++   GGVA+ +YNT +S+   A+AS   A
Sbjct:    3 KIKVANPIVEMDGDEQTRIIWHLIRDKLVLPYLDVDLKYYDLSVEYRDQTNDQVTVDSATATLKYGVAVKCATITPDEARVEEFHLKKMWKSPNGTIRNILGGTVFREPIIIPRIPRLVPQWEKPIIIGRHAFGDQYKATDVIVPEEGELRLVYKSKSGTHDVDLKVFDYPEHGGVAMMMYNTTDSIEGFAKASFELA 200          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_PONAB (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.642e-67
Identity = 118/191 (61.78%), Postives = 149/191 (78.01%), Query Frame = 2
Query:  101 IV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            +V M GDEMTR+ W+ IK+KLIFP++ELD+  +DLG+ NRDAT+D+VT ++A+A  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ +YN D+S+   A +S   A
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMA 200          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHP_YEAST (Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae GN=IDP1 PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.451e-67
Identity = 123/203 (60.59%), Postives = 154/203 (75.86%), Query Frame = 2
Query:   71 AFQKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD--EKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            AF KIKV  P+V +DGDEMTR+ W  IK KLI P+L++D+KY+DL + +RDAT DK+T ++A+A  KY V IKCATITPDEARVKEF L +MWKSPNGTIRNIL GTVFREPI+   +PRL+P W KPI IGRHA GDQY+ATDT+I GPG L+LV+ P      +   L+VY++ G  GVA+++YNTDES+   A +S   A
Sbjct:   16 AFSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKG-SGVAMAMYNTDESIEGFAHSSFKLA 217          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHP_DICDI (Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.507e-67
Identity = 120/199 (60.30%), Postives = 155/199 (77.89%), Query Frame = 2
Query:   77 QKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            ++IKV  P+V MDGDE TR+ W+SIK KLIFP++++  +Y+DLGLPNRDAT+D+VT+++A A  +  + +KCATITPDEARVKEF LK+MWKSPNGTIRNIL+GTVFR PIICKN+P L+PGW KPI IGRHA GDQY+ATD V+ GPGKL+++F P  + E     +Y+F G  GVA+ +YNT  S+ A A +    A
Sbjct:   25 KRIKVTGPVVEMDGDEQTRIMWESIKSKLIFPYVDITPEYYDLGLPNRDATNDQVTIDAANAIKRAKIGVKCATITPDEARVKEFGLKEMWKSPNGTIRNILDGTVFRGPIICKNLPLLVPGWKKPIIIGRHAHGDQYKATDFVVNGPGKLEMIFTP-SQGEPIKKVIYDFKG-SGVAMGMYNTTSSITAFAHSCFQYA 221          
The following BLAST results are available for this feature:
BLAST of CN185724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHP_ASPNG7.936e-7265.66Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_SCHPO1.354e-7162.87Probable isocitrate dehydrogenase [NADP], mitochon... [more]
IDHH_YEAST1.267e-6963.13Isocitrate dehydrogenase [NADP] OS=Saccharomyces c... [more]
IDH2_CANTR4.815e-6963.32Isocitrate dehydrogenase [NADP] peroxisomal OS=Can... [more]
IDH1_CANTR1.073e-6863.13Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_BOVIN2.390e-6862.83Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos... [more]
IDHC_YEAST2.023e-6760.61Isocitrate dehydrogenase [NADP] cytoplasmic OS=Sac... [more]
IDHC_PONAB2.642e-6761.78Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pon... [more]
IDHP_YEAST3.451e-6760.59Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_DICDI4.507e-6760.30Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185724 ID=CN185724; Name=CN185724; organism=Citrus sinensis; type=EST; length=674bp
CGGCACTCCGCTCTGCACTATTATCTCTCTCTAGTTGTGAATCAACCGAA
ACTGATTAAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTCGCCCATCCC
ATCGTCTAAATGGACGGAGATGAAATGACTCGAGTTTTCTGGAAATCGAT
TAAGGATAAGCTTATTTTCCCTTTTCTGGAGTTGGACATAAAGTACTTCG
ACCTTGGCCTTCCGAATCGTGATGCAACTGATGACAAAGTTACCGTTGAA
AGTGCACAAGCCACTCTCAAGTACAATGTAGCGATCAAGTGTGCTACTAT
TACTCCAGATGAAGCTCGTGTCAAGGAATTTGTCTTGAAACAGATGTGGA
AGAGTCCAAATGGGACAATCAGGAATATTTTGAATGGCACTGTTTTCAGA
GAACCAATCATTTGCAAAAATGTCCCTCGGCTTATTCCAGGCTGGACAAA
GCCCATATGCATTGGCAGGCATGCTTTTGGTGATCAATATCGAGCAACTG
ATACAGTTATTCAAGGACCTGGCAAACTTAAATTGGTGTTTGTACCAGAG
GGAAAAGATGAGAAGACATAGTTAGAGGTTTACAACTTTACGGGTGAGGG
TGGAGTTGCATTGTCCGTGTATAACACTGATGAGTCCGTCCGAGCTTCTG
CTGAGGCTTCTATGAACACTGCCT
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