CN185724

Overview
NameCN185724
Unique NameCN185724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1966 contig Csv1_Contig1966:100..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_SHEEP (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.886e-67
Identity = 117/191 (61.26%), Postives = 149/191 (78.01%), Query Frame = 2
Query:  101 IV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            +V M GDEMTR+ W+ IK+KLIFP+++LD+  +DL + NRDAT+D+VT ++A+A  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P     KT   V+NFT  GGVA+ ++N D+S+   A +S   A
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLIFPYVDLDLHSYDLSIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEICYTPSDGSPKTVYLVHNFTESGGVAMGMFNQDKSIEDFAHSSFQMA 200          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_HUMAN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.004e-66
Identity = 117/191 (61.26%), Postives = 149/191 (78.01%), Query Frame = 2
Query:  101 IV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            +V M GDEMTR+ W+ IK+KLIFP++ELD+  +DLG+ NRDAT+D+VT ++A+A  K+NV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ +YN D+S+   A +S   A
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMA 200          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.311e-66
Identity = 117/191 (61.26%), Postives = 149/191 (78.01%), Query Frame = 2
Query:  101 IV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            +V M GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++A+A  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ F P+   +K    V++F   GGVA+ +YN D+S+   A +S   A
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITFTPKDGSQKVTYLVHSFEEGGGVAMGMYNQDKSIEDFAHSSFQMA 200          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.921e-66
Identity = 116/191 (60.73%), Postives = 149/191 (78.01%), Query Frame = 2
Query:  101 IV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            +V M GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++A+A  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ +YN D+S+   A +S   A
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHDFEEGGGVAMGMYNQDKSIEDFAHSSFQMA 200          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.921e-66
Identity = 116/191 (60.73%), Postives = 149/191 (78.01%), Query Frame = 2
Query:  101 IV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            +V M GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++A+A  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ +YN D+S+   A +S   A
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSIEDFAHSSFQMA 200          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.921e-66
Identity = 116/191 (60.73%), Postives = 149/191 (78.01%), Query Frame = 2
Query:  101 IV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMNTA 673
            +V M GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++A+A  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ GW KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ +YN D+S+   A +S   A
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHSFEEGGGVAMGMYNQDKSIEDFAHSSFQMA 200          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.227e-64
Identity = 117/196 (59.69%), Postives = 147/196 (75.00%), Query Frame = 2
Query:   80 KIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMN 667
            KIKV+ P+V +DGDEMTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A A  K+ V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+  NVPRL+PGWTKPI IGRHAFGDQYRAT+  +  PG + L F P         E+ +   +GGV L +YN  ES+R  A AS +
Sbjct:    6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGMYNFKESIRDFARASFS 201          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDH_MYCBO (Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis GN=icd PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.227e-64
Identity = 117/196 (59.69%), Postives = 147/196 (75.00%), Query Frame = 2
Query:   80 KIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMN 667
            KIKV+ P+V +DGDEMTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A A  K+ V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+  NVPRL+PGWTKPI IGRHAFGDQYRAT+  +  PG + L F P         E+ +   +GGV L +YN  ES+R  A AS +
Sbjct:    6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGMYNFKESIRDFARASFS 201          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDH_SPHYA (Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.023e-63
Identity = 114/196 (58.16%), Postives = 150/196 (76.53%), Query Frame = 2
Query:   80 KIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMN 667
            KIKV +P+V +DGDEMTR+ W+ I+++LI P+L++D+KY+DL +  RD T D++T+++A A  +Y V +KCATITPDEARV+EF LK+MWKSPNGTIRNIL G VFREPI+ KNVPRL+PGWT PI +GRHAFGDQY+ATD  + G G L + +V    +E    EV+ F    GVA+ +YN DES+R  A+AS N
Sbjct:    3 KIKVKNPVVEIDGDEMTRIIWEWIRERLILPYLDVDLKYYDLSVEKRDETSDQITIDAANAIKEYGVGVKCATITPDEARVEEFGLKKMWKSPNGTIRNILGGVVFREPIVIKNVPRLVPGWTDPIVVGRHAFGDQYKATDFKVPGAGTLTMKWVGTNGEELE-YEVFEFP-SAGVAMGMYNLDESIRDFAKASFN 196          
BLAST of CN185724 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.149e-62
Identity = 114/197 (57.87%), Postives = 146/197 (74.11%), Query Frame = 2
Query:   77 QKIKVAHPIV*MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAQATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT*LEVYNFTGEGGVALSVYNTDESVRASAEASMN 667
            +KI V++P+  + GDE TRV W  I+ KLIFPFL+L ++ +DLG+  RD T+D+VT+++A A  +  V IKCATITPDEARV EF LK+MWKSPNGTIRN L GT+FREPI+CKNVPRL+  W K I IGRHAFGDQYRATD V++G GKL+L + P         +V++F  +GGVAL +YNTD S++  A A  N
Sbjct:    3 EKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFLDLKVETYDLGIEYRDKTNDQVTIDAANAIKRLKVGIKCATITPDEARVTEFGLKEMWKSPNGTIRNTLGGTLFREPIVCKNVPRLVTCWNKSIVIGRHAFGDQYRATDFVVKGAGKLELTYTPADGSAPQKFQVFDFPSDGGVALGMYNTDASIKEFAYACFN 199          
The following BLAST results are available for this feature:
BLAST of CN185724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_SHEEP5.886e-6761.26Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovi... [more]
IDHC_HUMAN1.004e-6661.26Isocitrate dehydrogenase [NADP] cytoplasmic OS=Hom... [more]
IDHC_MICME1.311e-6661.26Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_RAT2.921e-6660.73Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE2.921e-6660.73Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHC_MICOH2.921e-6660.73Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDH_MYCTU1.227e-6459.69Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]
IDH_MYCBO1.227e-6459.69Isocitrate dehydrogenase [NADP] OS=Mycobacterium b... [more]
IDH_SPHYA3.023e-6358.16Isocitrate dehydrogenase [NADP] OS=Sphingomonas ya... [more]
IDHC_DICDI1.149e-6257.87Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185724 ID=CN185724; Name=CN185724; organism=Citrus sinensis; type=EST; length=674bp
CGGCACTCCGCTCTGCACTATTATCTCTCTCTAGTTGTGAATCAACCGAA
ACTGATTAAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTCGCCCATCCC
ATCGTCTAAATGGACGGAGATGAAATGACTCGAGTTTTCTGGAAATCGAT
TAAGGATAAGCTTATTTTCCCTTTTCTGGAGTTGGACATAAAGTACTTCG
ACCTTGGCCTTCCGAATCGTGATGCAACTGATGACAAAGTTACCGTTGAA
AGTGCACAAGCCACTCTCAAGTACAATGTAGCGATCAAGTGTGCTACTAT
TACTCCAGATGAAGCTCGTGTCAAGGAATTTGTCTTGAAACAGATGTGGA
AGAGTCCAAATGGGACAATCAGGAATATTTTGAATGGCACTGTTTTCAGA
GAACCAATCATTTGCAAAAATGTCCCTCGGCTTATTCCAGGCTGGACAAA
GCCCATATGCATTGGCAGGCATGCTTTTGGTGATCAATATCGAGCAACTG
ATACAGTTATTCAAGGACCTGGCAAACTTAAATTGGTGTTTGTACCAGAG
GGAAAAGATGAGAAGACATAGTTAGAGGTTTACAACTTTACGGGTGAGGG
TGGAGTTGCATTGTCCGTGTATAACACTGATGAGTCCGTCCGAGCTTCTG
CTGAGGCTTCTATGAACACTGCCT
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