CN185721

Overview
NameCN185721
Unique NameCN185721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6849 contig Csv1_Contig6849:279..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.908e-24
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGFLSSALTNAPSS-ARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIPS FGGRR++VF PFSLDVWDPF  F        PSS + E S F + R+DWK+TP AHVFKAD+P L KEEVK+++++GR+L
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDF------PFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVL 81          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.719e-23
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGFLSSALTNAPSSA--RETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIP  FGGRR+NVF PFSLD+WDPF  F      + P+S+   E S F + R+DWK+TP AHVFKAD+P L KEEVKV +E+ R+L
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVL 82          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.532e-23
Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   46 MSLIPSIF--GGRRTNVFHPFSLD-VWDPFHGFLSSALTNAPSS--ARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIP+ +   GRR+N+F PFSLD +WDPF G L S L+  P S  A ET+ F NARIDWK+TP AHVFKADLP + KEEVKV+VE+G +L
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFG-LPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVL 90          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.455e-22
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTNVFHPFSLDVWDPFHGFLSSALTNAPSSA--RETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIPSIFGG R+NVF PFSLD+WDPF  F      + P+S+   E S F N R+DWK+T  AHV KAD+P L KEEVKV +E+ R+L
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVL 82          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.455e-22
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   46 MSLIPSIFGG-RRTNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MS+IPS F   RR+N+F PFSLDVWDPF    SS+L+      RE S   NAR+DW++TP AHVFKADLP L KEEVKV++EE  +L
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLS------RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVL 81          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.482e-22
Identity = 56/87 (64.37%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   46 MSLIPSIFGGRR-TNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIP IFG RR T+VF PFS+DV+DPF       L    S++ ETS F N RIDWK+TP AHVFKADLP L KEEVKV+VEE R+L
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPF-----KELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVL 82          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.779e-20
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   76 RRTNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            RR+NVF PFSLD+WDPF     S +    +S  +T+ F NARIDWK+TP +HVFKADLP + KEEVKV+VEEG +L
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVL 78          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.779e-20
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   76 RRTNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            RR+NVF PFSLD+WDPF     S +    +S  +T+ F NARIDWK+TP +HVFKADLP + KEEVKV+VEEG +L
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVL 78          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.034e-20
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTN-VFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIP IFG RR++ +F PFS+DV+DPF       L    +++ ETS F N RIDWK+TP AHVFKADLP L  EEVKV+VEE R+L
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFR-----ELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVL 82          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.034e-20
Identity = 50/88 (56.82%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   46 MSLIPSIFGGRR--TNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIPS FG  R   ++F PFSLDVWDPF       L    S + ETS  TNAR+DWK+T  AHVFKADLP + KEEVKV++E+  +L
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPF-----KELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVL 83          
The following BLAST results are available for this feature:
BLAST of CN185721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
HSP11_SOYBN5.908e-2460.9217.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN1.719e-2359.0917.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_CHERU6.532e-2362.6418.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP15_SOYBN1.455e-2259.0917.6 kDa class I heat shock protein OS=Glycine max... [more]
HS17B_ARATH1.455e-2259.7717.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP12_SOLPE2.482e-2264.3717.6 kDa class I heat shock protein OS=Solanum per... [more]
HS16B_ORYSJ1.779e-2060.5316.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ1.779e-2060.5316.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP11_SOLPE3.034e-2059.7717.7 kDa class I heat shock protein OS=Solanum per... [more]
HS178_ARATH3.034e-2056.8217.8 kDa class I heat shock protein OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185721 ID=CN185721; Name=CN185721; organism=Citrus sinensis; type=EST; length=303bp
ATGTTGAAGTTGTTGAGCATTTAATTAGCGCCCCAGTTTGCCATAATGTC
ACTCATTCCAAGCATCTTCGGTGGACGAAGAACCAACGTGTTCCATCCAT
TTTCATTAGATGTATGGGATCCTTTCCACGGGTTCTTGTCCTCTGCCCTT
ACCAACGCGCCGTCTTCTGCTAGGGAAACATCCCAATTCACCAATGCAAG
AATTGACTGGAAAGACACTCCTCACGCTCATGTATTCAAGGCTGATCTTC
CACGGCTGACGAAAGAAGAAGTGAAAGTTGACGTTGAAGAGGGCAGGATT
CTG
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