CN185721

Overview
NameCN185721
Unique NameCN185721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6849 contig Csv1_Contig6849:279..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.176e-20
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   76 RRTNVFHPFSLDVWDPFHGFL-----SSALTNAPSSAR----ETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            RR+NVF PFSLD+WDPF GF      SS+ +  PS  R    ET+ F  ARIDWK+TP AHVFKAD+P L KEEVKV+V++G IL
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNIL 89          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.760e-20
Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   46 MSLIPSIFGGRRTN-VFHPFSLDVWDPFH--GFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIP IFG RR++ +F PFS+DV+DPF   GF S+       ++ E+S F N RIDWK+TP  HVFK DLP L KEEVKV+VEE R+L
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPST-------NSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVL 82          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.760e-20
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   76 RRTNVFHPFSLDVWDPFHGFLSSALTNAPSS---------ARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            RR+NVF PFSLD+WDPF GF   + + +  S         + ET+ F  ARIDWK+TP AHVFKAD+P L KEEVKV+VE+G +L
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVL 89          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.760e-20
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   76 RRTNVFHPFSLDVWDPFHGFLSSALTNA--PSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            RR+NVF PFSLD+WDPF GF   + + +  P +  + + F  ARIDWK+TP AHVFKAD+P L KEEVKV+VE+G +L
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVL 82          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.382e-19
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   76 RRTNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            RR+NVF PF+ D WDPF G   S +    +S R+T+ F NAR+DWK+TP +HVFKADLP + KEEVKV+VEEG +L
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVP--ATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVL 77          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.723e-19
Identity = 49/89 (55.06%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   46 MSLIPSIFGGRR---TNVFHPFSLDVWDPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            MSLIPS FG  R    N+F PFSLDVWDPF           PSS+  +S   NAR+DWK+T  AHVFKADLP + KEEVKV++E+  +L
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKEL------QFPSSS--SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVL 81          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.327e-18
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   97 PFSLDVWDPFHGF-LSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            PFSLDVWDPF  F  +++  +A S  +E S F + RIDWK+TP AHVFKADLP L KEEVKV++E+ R+L
Sbjct:    2 PFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVL 71          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   76 RRTNVFHPFSLDVWDPFHGF-------LSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            RR N F PFSLD+WDP  GF        SS+ +  P +  + + F  ARIDWK+TP  HVFKAD+P L KEEVKV+V++G IL
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNIL 87          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.101e-17
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   76 RRTNVFHPFSLDVW-DPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            RRTNVF PF+ D+W DPF  F  S +        ET+ F NAR+DWK+TP AHVFKADLP + KEEVKV+VE+G +L
Sbjct:    5 RRTNVFDPFA-DLWADPFDTF-RSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVL 79          
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.558e-16
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   76 RRTNVFHPFSLDVW-DPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            RR+NVF PF+ D+W DPF  F S     +  S+ ET+ F NAR+DWK+TP AHVFK DLP + KEEVKV+VE+G +L
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSS-ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVL 79          
The following BLAST results are available for this feature:
BLAST of CN185721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
HS17A_ORYSJ5.176e-2060.0017.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLLC6.760e-2058.4317.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS181_ORYSJ6.760e-2055.2918.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ6.760e-2057.6917.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ4.382e-1959.2116.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS17A_ARATH5.723e-1955.0617.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP11_MEDSA6.327e-1860.0018.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS177_ORYSJ1.410e-1753.0117.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_WHEAT4.101e-1758.4416.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS16A_WHEAT1.558e-1657.1416.9 kDa class I heat shock protein 1 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185721 ID=CN185721; Name=CN185721; organism=Citrus sinensis; type=EST; length=303bp
ATGTTGAAGTTGTTGAGCATTTAATTAGCGCCCCAGTTTGCCATAATGTC
ACTCATTCCAAGCATCTTCGGTGGACGAAGAACCAACGTGTTCCATCCAT
TTTCATTAGATGTATGGGATCCTTTCCACGGGTTCTTGTCCTCTGCCCTT
ACCAACGCGCCGTCTTCTGCTAGGGAAACATCCCAATTCACCAATGCAAG
AATTGACTGGAAAGACACTCCTCACGCTCATGTATTCAAGGCTGATCTTC
CACGGCTGACGAAAGAAGAAGTGAAAGTTGACGTTGAAGAGGGCAGGATT
CTG
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