CN185721

Overview
NameCN185721
Unique NameCN185721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6849 contig Csv1_Contig6849:279..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185721 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.491e-11
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   76 RRTNVFHPFSLDVW---DPFHGFLSSALTNAPSSARETSQFTNARIDWKDTPHAHVFKADLPRLTKEEVKVDVEEGRIL 303
            R  NV  P S+D W   DPF G + S     P         TN R+DWK+TP AHVF ADLP + K++ KV+VE+G +L
Sbjct:    5 RSGNVLDPMSVDFWADADPF-GAVRSLAERCPV-------LTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVL 75
The following BLAST results are available for this feature:
BLAST of CN185721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
HS166_ORYSJ7.491e-1145.5716.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185721 ID=CN185721; Name=CN185721; organism=Citrus sinensis; type=EST; length=303bp
ATGTTGAAGTTGTTGAGCATTTAATTAGCGCCCCAGTTTGCCATAATGTC
ACTCATTCCAAGCATCTTCGGTGGACGAAGAACCAACGTGTTCCATCCAT
TTTCATTAGATGTATGGGATCCTTTCCACGGGTTCTTGTCCTCTGCCCTT
ACCAACGCGCCGTCTTCTGCTAGGGAAACATCCCAATTCACCAATGCAAG
AATTGACTGGAAAGACACTCCTCACGCTCATGTATTCAAGGCTGATCTTC
CACGGCTGACGAAAGAAGAAGTGAAAGTTGACGTTGAAGAGGGCAGGATT
CTG
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