CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.712e-33
Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   77 GHLNHSLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          

HSP 2 Score: 53.1434 bits (126), Expect = 2.712e-33
Identity = 27/71 (38.03%), Postives = 36/71 (50.70%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNG 319
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NG
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNG 75          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PYRAE (Superoxide dismutase [Fe] OS=Pyrobaculum aerophilum GN=sod PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.527e-33
Identity = 55/154 (35.71%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  235 GGRAAFSSFEQSR----HFHRRPVAGRYQVQRRGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            G  AA    E+ R        R V         GH+ HSIFW N+AP  +GGG+P    +   I+  FGS E   ++ S     ++G GW  L  +   ++L++      +  +  A     LL +DVWEHAYYLQYKN +  Y+ N WNV+NW
Sbjct:   42 GANAALEKLEKFRKGEAQIDIRAVLRDLSFHLNGHILHSIFWPNMAPPGKGGGKPG-GKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWAILVYEPLEEQLLILQIEKHN--LMHAADAQVLLALDVWEHAYYLQYKNDRGSYVDNWWNVVNW 192          

HSP 2 Score: 67.781 bits (164), Expect = 3.527e-33
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 250
            TLP LPY Y+ALEP IS EIMQLHHQKHHQ YV   N A+E+L
Sbjct:    8 TLPPLPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKL 50          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STAHJ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sodA PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 4.600e-33
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FW+ L P  E  G          I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   77 GHLNHSLFWELLTPNSEEKGTVVDK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELY 195          

HSP 2 Score: 53.5286 bits (127), Expect = 4.600e-33
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP+LPY   ALEP I  + M++HH KHH  YVT  N AVE
Sbjct:    5 LPNLPYATDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVE 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BRAFL (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.649e-33
Identity = 53/95 (55.79%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 606
            GH+NHSIFW NL P   GGGEP    L  AI   FGS EA  +KM+A   A+QGSGW WLGLD   K+L +    NQDPL      L PLLGIDV
Sbjct:   54 GHINHSIFWNNLCP--SGGGEPT-GPLAEAITRDFGSFEAFKEKMTAATVAVQGSGWGWLGLDPTSKKLRIVACPNQDPL-EGTTGLKPLLGIDV 144          

HSP 2 Score: 68.1662 bits (165), Expect = 4.649e-33
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 2
Query:  167 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            IS EIMQ+HHQKHH  YV N N A EQL +A++K D + ++ LQ AIKFNG
Sbjct:    2 ISAEIMQVHHQKHHATYVNNLNAAEEQLAEAIHKQDVTKMIALQSAIKFNG 52          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 5.986e-33
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH NHS+FW  ++P  +GGG P    LG AID   G  EA     +       GSGW WL + T    L+VE++ NQD  +    T  P+LG+DVWEHAYYL+Y+N +P+Y+   +NV++W+  +  Y
Sbjct:   77 GHANHSLFWTVMSP--QGGGRPD-GDLGRAIDEQLGGFEAFKDAFTKAALTRFGSGWAWLSV-TPQGSLLVESSGNQDSPLMNGNT--PILGLDVWEHAYYLKYQNRRPEYIGAFYNVIDWREVARRY 198          

HSP 2 Score: 56.225 bits (134), Expect = 5.986e-33
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG 301
            LP LPY Y ALEP I    M++HH KHHQ YV N N A+E    A   V+ S + QL G
Sbjct:    5 LPPLPYAYDALEPHIDALTMEIHHSKHHQTYVNNLNAALEGTPYAEQPVE-SLLRQLAG 62          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRAG (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae GN=sodA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 5.988e-33
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+NV+P+Y+K  + ++NW   +++YQ
Sbjct:   77 GHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYRNVRPNYIKAFFEIINWNKVNELYQ 198          

HSP 2 Score: 59.6918 bits (143), Expect = 5.988e-33
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E+
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEK 45          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRA5 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype V GN=sodA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 5.988e-33
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+NV+P+Y+K  + ++NW   +++YQ
Sbjct:   77 GHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYRNVRPNYIKAFFEIINWNKVNELYQ 198          

HSP 2 Score: 59.6918 bits (143), Expect = 5.988e-33
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E+
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEK 45          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRA3 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype III GN=sodA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 5.988e-33
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+NV+P+Y+K  + ++NW   +++YQ
Sbjct:   77 GHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYRNVRPNYIKAFFEIINWNKVNELYQ 198          

HSP 2 Score: 59.6918 bits (143), Expect = 5.988e-33
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E+
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEK 45          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_ONCVO (Superoxide dismutase [Mn], mitochondrial OS=Onchocerca volvulus GN=sod-2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.136e-33
Identity = 68/130 (52.31%), Postives = 86/130 (66.15%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+NH++FW+ L  V   G   P+S L  AI   FGSLE +I K++A+  A+QGSGW WL  D E KRL +    NQD L+     L+PL  IDVWEHAYYLQYKN++PD++K IW + NWK  SD Y K
Sbjct:   94 GHINHTLFWEGLTAVKNSG--EPNSELMTAIKKDFGSLETMIDKLNAKTIAIQGSGWGWLAYDKEMKRLQLACCPNQD-LLEPTTGLIPLFCIDVWEHAYYLQYKNLRPDFVKAIWKIANWKIISDRYIK 220          

HSP 2 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 2
Query:   77 LGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN--GEVMSTTQFSG 349
            +GK+  L  + L+ V LPDLPYDY ALEP +S EIMQ+HH KHH AYV   N+A E++ +AL K DT   V     + FN  G +  T  + G
Sbjct:   13 VGKNYCLNTQRLKHV-LPDLPYDYGALEPILSAEIMQVHHGKHHAAYVNALNQAEEKVKEALAKGDTQAAVAGTKLMNFNTGGHINHTLFWEG 104          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_HAEDU (Superoxide dismutase [Mn] OS=Haemophilus ducreyi GN=sodA PE=3 SV=4)

HSP 1 Score: 105.531 bits (262), Expect = 7.789e-33
Identity = 60/134 (44.78%), Postives = 78/134 (58.21%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GHVNH++FWK L       G     +L  AI   FGS+EA   +     A   GSGW WL L  E  +L V +TANQD P++ K    V   P+  +DVWEHAYYL Y+N +PDY+K  WNV+NW  AS  +++
Sbjct:   78 GHVNHTLFWKGLKT-----GTTLQGALKDAIIRDFGSVEAFQAEFEQAAATRFGSGWAWLVL--EEGKLAVVSTANQDSPIMGKDVAGVSGYPIFTLDVWEHAYYLHYQNRRPDYIKAFWNVVNWDEASRRFEE 204          

HSP 2 Score: 56.225 bits (134), Expect = 7.789e-33
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 2
Query:  116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNK 268
            T  LP+L Y Y ALEP    E M++HH KHHQAYV N N  +E+  + L K
Sbjct:    2 TYQLPELGYAYDALEPYFDKETMEIHHSKHHQAYVNNSNALLEKHPELLEK 52          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM1_STAA32.712e-3342.97Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODF_PYRAE3.527e-3335.71Superoxide dismutase [Fe] OS=Pyrobaculum aerophilu... [more]
SODM_STAHJ4.600e-3342.19Superoxide dismutase [Mn/Fe] OS=Staphylococcus hae... [more]
SODM_BRAFL4.649e-3355.79Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_PSEAE5.986e-3342.19Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]
SODM_STRAG5.988e-3339.53Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA55.988e-3339.53Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA35.988e-3339.53Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_ONCVO6.136e-3352.31Superoxide dismutase [Mn], mitochondrial OS=Onchoc... [more]
SODM_HAEDU7.789e-3344.78Superoxide dismutase [Mn] OS=Haemophilus ducreyi G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
back to top