CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM3_PLEBO (Superoxide dismutase [Mn] 3 (Fragment) OS=Plectonema boryanum GN=sodA3 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.012e-32
Identity = 54/129 (41.86%), Postives = 84/129 (65.12%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+NH+IFW+ ++P  +GGG+P   ++  AI+  FG+ E+  ++ +  G    GSGWVWL  + +  +L + +TANQD  + +     P++G DVWEHAYYL+Y+N + DYL N WNV+NW   +  +Q
Sbjct:  108 GHLNHTIFWQIMSP--DGGGQPT-GAIAQAINQTFGNFESFRKQFNEAGGDRFGSGWVWLVRNAQ-GQLQIVSTANQDNPIMEGN--YPIMGNDVWEHAYYLRYQNRRADYLNNWWNVVNWNEINRRFQ 230          

HSP 2 Score: 52.373 bits (124), Expect = 1.012e-32
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP LPYD  AL  AI  E M++HH +HHQ YV N N A++
Sbjct:   35 LPPLPYDAGALSKAIDAETMRIHHDRHHQTYVDNLNTALK 74          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.015e-32
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NH++FW+ L+P          + +  AI+  FGS +      +A      GSGW WL +D E K L V +TANQD  +++   L P+L +DVWEHAYYL Y+NV+P+Y+K  + V+NW   + +Y
Sbjct:   77 GHLNHALFWELLSPEKT----KVTAEVAAAINEAFGSFDDFKAAFTAAATTRFGSGWAWLVVDKEGK-LEVTSTANQDTPISQG--LKPILALDVWEHAYYLNYRNVRPNYIKAFFEVINWNTVARLY 197          

HSP 2 Score: 59.6918 bits (143), Expect = 1.015e-32
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E+
Sbjct:    3 ILLPDLPYAYDALEPYIDAETMTLHHDKHHATYVANANAALEK 45          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.319e-32
Identity = 58/132 (43.94%), Postives = 82/132 (62.12%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL-VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH NH+ FW++LA  ++ G   P  +L   I   FGSL+A  QK +   +   GSGW WL + T   +L V +T NQD PL+  + T   PLLG+DVWEHAYYL+Y+N + DY+K  W+V+NW   ++ Y +
Sbjct:   96 GHFNHTFFWESLAATNKTG--QPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWL-IVTPNGKLAVTSTPNQDNPLMDLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFWSVVNWNKVNERYNE 224          

HSP 2 Score: 50.447 bits (119), Expect = 1.319e-32
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 2
Query:   47 RSLATRKAIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAI-KFNGEV 325
            RSL T   + L  SV + +  L       LPY  +AL+PAI  + M++H+ KHH+AYV N N  + + +  L+K D   ++QLQ  I K+N  V
Sbjct:    3 RSLKTTLIL-LASSV-ISMSALAEFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQI-KTYPELDKTD---LIQLQKQISKYNTAV 90          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_STRCO (Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coelicolor GN=sodF1 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.321e-32
Identity = 51/133 (38.35%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSS----LGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH+ HSI+W N+    +GGGEP        L  AI   FGS      +++   A  QGSGW  L  +    RL+VE   +    V +  T  P+L  D WEHA+YLQYKN K D++  +W V+NW+  +  Y+
Sbjct:   72 GHILHSIYWHNMTG--DGGGEPLDKDGVGELADAIAESFGSFAGFRAQLTKAAATTQGSGWGVLAYEPLSGRLIVEQIYDHQGNVGQGST--PILVFDAWEHAFYLQYKNQKVDFIDAMWAVVNWQDVARRYE 200          

HSP 2 Score: 70.0922 bits (170), Expect = 1.321e-32
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  110 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316
            +   TLP+LPYDYSAL P IS EI++LHH KHH AYV   N  +EQL +A +K    ++  L+  + F+
Sbjct:    1 MSVYTLPELPYDYSALAPVISPEIIELHHDKHHAAYVKGANDTLEQLAEARDKETWGSINGLEKNLAFH 69          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_EPTST (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Eptatretus stoutii PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.269e-32
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 606
            GH+NHSIFW+NL+P   GGG+P    L  AI+  FGS++ L +K+ A    +QGSGW WLG + E KRL + T ANQDPL      L PLLGIDV
Sbjct:   54 GHINHSIFWRNLSP--SGGGQPCGDLLK-AIENDFGSVDKLREKLVAAAVGVQGSGWAWLGFNKESKRLQIATCANQDPL-QGTTGLFPLLGIDV 144          

HSP 2 Score: 63.929 bits (154), Expect = 2.269e-32
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 2
Query:  167 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            IS EIMQLHH KHH AYV N N   E+L +AL K D +T V LQ A +FNG
Sbjct:    2 ISAEIMQLHHSKHHAAYVNNVNVVEEKLAEALGKGDVNTQVSLQPAFRFNG 52          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM2_PLEBO (Superoxide dismutase [Mn] 2 OS=Plectonema boryanum GN=sodA2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.920e-32
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  274 HFHRRPVAGRYQVQRR--GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 687
            H  R P   R  V+    GHVNH++FW+ +      G   P  ++  AI+  FGS +A  Q+ +  G    GSGWVWL + ++   L + +T NQD  + +  T  P++G DVWEHAYYL+Y+N +P+YL   WNV+NW+
Sbjct:   60 HLDRVPEDVRTTVRNNAGGHVNHTMFWEIMGA---NGSGAPTGAISEAINNSFGSFDAFKQQFNDAGTKRFGSGWVWL-VRSQQGDLQILSTPNQDSPLIEGHT--PIMGNDVWEHAYYLKYQNRRPEYLNAWWNVLNWE 193          

HSP 2 Score: 55.8398 bits (133), Expect = 2.920e-32
Identity = 25/41 (60.98%), Postives = 27/41 (65.85%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            L  LPY Y ALEP I    MQLHH KHH AYV N N A+E+
Sbjct:    5 LKPLPYAYDALEPYIDATTMQLHHDKHHAAYVNNLNAAIEK 45          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.922e-32
Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH NH++FW+ L+P    GG  P   L  AI+  FGS +   +K +   A   GSGW WL ++    +L + +T NQD  + +  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV+NW   +  Y +
Sbjct:   78 GHANHTLFWQILSP---NGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLVVNDG--KLEITSTPNQDTPLMEGKT--PILGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVAKRYNE 200          

HSP 2 Score: 49.2914 bits (116), Expect = 2.922e-32
Identity = 22/40 (55.00%), Postives = 25/40 (62.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP LPY  +ALEP I    M +HH KHH  YVT  N A+E
Sbjct:    5 LPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALE 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM2_STAAB (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodM PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.457e-32
Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  289 PVAGRYQVQRRG--HVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            P A R  V+  G  H NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYYL+Y+N +PDY+   WN++NWK   ++YQ
Sbjct:   64 PEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNNG--KLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQ 196          

HSP 2 Score: 53.5286 bits (127), Expect = 6.457e-32
Identity = 23/40 (57.50%), Postives = 25/40 (62.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVE 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM2_STAAW (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MW2) GN=sodM PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.409e-32
Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  289 PVAGRYQVQRRG--HVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            P A R  V+  G  H NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYYL+Y+N +PDY+   WN++NWK   ++YQ
Sbjct:   64 PEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDG--KLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQ 196          

HSP 2 Score: 53.5286 bits (127), Expect = 8.409e-32
Identity = 23/40 (57.50%), Postives = 25/40 (62.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVE 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM2_STAAS (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MSSA476) GN=sodM PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.409e-32
Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  289 PVAGRYQVQRRG--HVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            P A R  V+  G  H NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYYL+Y+N +PDY+   WN++NWK   ++YQ
Sbjct:   64 PEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDG--KLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQ 196          

HSP 2 Score: 53.5286 bits (127), Expect = 8.409e-32
Identity = 23/40 (57.50%), Postives = 25/40 (62.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVE 44          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM3_PLEBO1.012e-3241.86Superoxide dismutase [Mn] 3 (Fragment) OS=Plectone... [more]
SODM_STRMU1.015e-3240.63Superoxide dismutase [Mn/Fe] OS=Streptococcus muta... [more]
SODM_ACIAD1.319e-3243.94Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODF_STRCO1.321e-3238.35Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coe... [more]
SODM_EPTST2.269e-3253.68Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM2_PLEBO2.920e-3240.00Superoxide dismutase [Mn] 2 OS=Plectonema boryanum... [more]
SODM_BACHD2.922e-3241.54Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODM2_STAAB6.457e-3239.44Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAW8.409e-3239.44Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAS8.409e-3239.44Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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