CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCSC (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium scrofulaceum GN=sodA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.545e-30
Identity = 62/121 (51.24%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   46 GHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 161          

HSP 2 Score: 31.5722 bits (70), Expect = 1.545e-30
Identity = 14/33 (42.42%), Postives = 18/33 (54.55%), Query Frame = 2
Query:  188 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286
            LHH KHH  YV   N AV +L +A    D + +
Sbjct:    1 LHHSKHHATYVKGVNDAVAKLQEARANDDHAAI 33          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCIT (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium intracellulare GN=sodA PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.012e-30
Identity = 62/121 (51.24%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+K  WNV+NW
Sbjct:   46 GHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDRFRAQFSAAANGLQGSGWAVLGYDTLGNRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVKAFWNVVNW 161          

HSP 2 Score: 31.187 bits (69), Expect = 2.012e-30
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 2
Query:  188 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286
            LHH KHH  YV   N A+ +L +A    D + +
Sbjct:    1 LHHSKHHATYVKGVNDALSKLEEARANEDHAAI 33          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM2_BACAN (Superoxide dismutase [Mn] 2 OS=Bacillus anthracis GN=sodA2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 5.743e-30
Identity = 52/128 (40.62%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH  HS+FW+ ++P   GGGEP +  +   ID +F + + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYYL+Y+N +P+++ N W+ +NW   ++ Y
Sbjct:   79 GHYCHSLFWEVMSP--RGGGEP-NGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTVNWDRVNEKY 199          

HSP 2 Score: 52.7582 bits (125), Expect = 5.743e-30
Identity = 23/53 (43.40%), Postives = 29/53 (54.72%), Query Frame = 2
Query:  110 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNK 268
            + +  LP L YDY  LEP I    + +HH KHH  YV N N A+E   +  NK
Sbjct:    1 MSSFQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNK 53          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_METTM (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=sod PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.748e-30
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 687
            G+V H  FW N+ P  E GGEP    L   I+  FGS +   ++ S    + +GSGW  L       RL +      +  V   P    L+ +DVWEHAYY+ Y+NV+PDY++  WN++NWK
Sbjct:   74 GYVLHLFFWGNMGPADECGGEPD-GRLAEYIEKDFGSFQRFKKEFSQAAVSAEGSGWAVLTYCQRTDRLFIMQVEKHN--VNVIPHFRILMVLDVWEHAYYIDYRNVRPDYVEAFWNIVNWK 192          

HSP 2 Score: 56.9954 bits (136), Expect = 5.748e-30
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK 310
            LP+LPY Y ALEP IS E +++HH+KHHQAYV   N  + +L  A    +    V ++ A+K
Sbjct:    8 LPELPYPYDALEPYISEEQLRIHHEKHHQAYVDGANGVLRKLDDAR---ENGEEVDIKAALK 66          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM2_BACCR (Superoxide dismutase [Mn] 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.268e-29
Identity = 52/128 (40.62%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH  HS+FW+ ++P   GGGEP +  +   ID +F + + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYYL+Y+N +P+++ N W+ +NW   ++ Y
Sbjct:   79 GHYCHSLFWEVMSP--RGGGEP-NGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTVNWDQVNEKY 199          

HSP 2 Score: 51.2174 bits (121), Expect = 1.268e-29
Identity = 22/53 (41.51%), Postives = 28/53 (52.83%), Query Frame = 2
Query:  110 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNK 268
            + +  LP L YDY  LEP I    + +HH KHH  YV N N  +E   +  NK
Sbjct:    1 MSSFQLPKLSYDYDELEPHIDSNTLSIHHGKHHATYVNNLNATLENYTELHNK 53          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCKA (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium kansasii GN=sodA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.663e-29
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  ++PLL +D+WEHA+YLQYKNVK D+ K  WNV+NW
Sbjct:   46 GHVNHTIWWKNLSP---NGGDKPTGELAAAIDEAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIIPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 161          

HSP 2 Score: 37.3502 bits (85), Expect = 1.663e-29
Identity = 18/43 (41.86%), Postives = 24/43 (55.81%), Query Frame = 2
Query:  188 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316
            LHH KHH  YV   N AV +L +A  K D S ++  +  + FN
Sbjct:    1 LHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFN 43          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.151e-29
Identity = 51/126 (40.48%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYASDVY 705
            NHS +W ++ P    GG  P  +L   I   FGS E  + +     A   GSGW WL LD     L +  T N D  +    T  PLL IDVWEHAYYL Y+N +PDY+   +  + NW +AS  Y
Sbjct:   78 NHSFYWNSIKP---NGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLVLDNG--TLKITKTGNADTPIAHGQT--PLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANY 196          

HSP 2 Score: 58.151 bits (139), Expect = 2.151e-29
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP LP+DY+AL P I+ E ++ HH KHH AYV NYN AV+
Sbjct:    5 LPALPFDYTALAPYITKETLEFHHDKHHAAYVNNYNNAVK 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_BACSU (Probable superoxide dismutase [Fe] OS=Bacillus subtilis GN=sodF PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.712e-29
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH  HSIFW ++   H  G   P  +L   ID  FGS  A  +  +     ++G GW  L       RL +  TA +  L ++   ++PLL +DVWEHAYYLQYKN +  Y+ + WNV++W+ A   +++
Sbjct:  148 GHYLHSIFWFSM---HPNGKRRPTGALFQMIDLSFGSYSAFKEHFTQASKKVEGVGWAILVWAPRSGRLEI-LTAEKHQLFSQWD-VIPLLPLDVWEHAYYLQYKNDRASYVDHWWNVVDWREAEKRFEQ 272          

HSP 2 Score: 62.7734 bits (151), Expect = 4.712e-29
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            LP LPY YSALEP IS +IM LHH KHHQ+YV   NKA  +L +A    +   +   +  + F+G
Sbjct:   82 LPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAESELKKARATKNYDLITHWERELAFHG 146          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.048e-28
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 1
Query:  325 HVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYASDVYQ 708
            H NH  FWK +     GGG      L  AI +  G  +      SA GA   GSGW WL +    K  + +T   ++PLV  A    P+LG+DVWEH+YY+ Y+N +P YL+  + N++NW Y  ++Y+
Sbjct:   74 HYNHVHFWKWMKK--GGGGTSLPGKLDAAIKSDLGGYDKFRADFSAAGAGQFGSGWAWLSVKNG-KLEISKTPNGENPLVHGA---TPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYE 196          

HSP 2 Score: 58.5362 bits (140), Expect = 1.048e-28
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            LP+LPYDY AL P +S E ++ HH KHH AYVTN NK  E+
Sbjct:    5 LPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEE 45          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.366e-28
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            NH+ +W +++P   GGGEP    L  AI+  FGS  A  ++ S   A   GSGW WL  D      ++ T+    P+      L  LL  DVWEHAYY+ Y+N +PDY++  W+++NW +AS
Sbjct:   73 NHTFYWHSMSP--NGGGEPK-GRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWLVQDQSGALKIINTSNAGTPMTEG---LNALLTCDVWEHAYYIDYRNRRPDYIEAFWSLVNWDFAS 188          

HSP 2 Score: 51.6026 bits (122), Expect = 1.366e-28
Identity = 22/42 (52.38%), Postives = 27/42 (64.29%), Query Frame = 2
Query:  116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV 241
            T TLP LPY   AL P +S E ++ H+ KHH  YVTN NK +
Sbjct:    2 TFTLPQLPYALDALAPHVSKETLEYHYGKHHNTYVTNLNKLI 43          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM_MYCSC1.545e-3051.24Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCIT2.012e-3051.24Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM2_BACAN5.743e-3040.63Superoxide dismutase [Mn] 2 OS=Bacillus anthracis ... [more]
SODF_METTM5.748e-3038.52Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]
SODM2_BACCR1.268e-2940.63Superoxide dismutase [Mn] 2 OS=Bacillus cereus (st... [more]
SODM_MYCKA1.663e-2946.72Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODF_SYNE72.151e-2940.48Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_BACSU4.712e-2936.92Probable superoxide dismutase [Fe] OS=Bacillus sub... [more]
SODF_RHIME1.048e-2837.98Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODF_LEGPH1.366e-2839.34Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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