CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_PIG (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Sus scrofa GN=SOD2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.382e-28
Identity = 50/95 (52.63%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 606
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  RL +   +NQDPL      LVPLLGIDV
Sbjct:   54 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLVPLLGIDV 144          

HSP 2 Score: 57.3806 bits (137), Expect = 1.382e-28
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 2
Query:  167 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            I+ +IMQLHH +HH AYV N N   E+  +AL K D +  V LQ A+KFNG
Sbjct:    2 INAQIMQLHHSEHHAAYVNNLNVVEEKYQEALKKGDVTAQVALQPALKFNG 52          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BUCAP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sodA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.776e-28
Identity = 53/129 (41.09%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            GH+NHS+FWK L       G      L   I+  FGS+E    K         GSGW+WL        +V  +T NQD PL+ K+ +     P+ G+D+WEHAYYL+Y+N + DY+K+ WNV+NW  AS
Sbjct:   77 GHINHSLFWKGLKI-----GTILQGDLKSEINKQFGSVEYFKSKFEDIALNHFGSGWIWLVNQNGILSIV--STINQDNPLMGKSISGTHGNPIFGLDLWEHAYYLKYQNRRLDYIKSFWNVVNWDEAS 198          

HSP 2 Score: 53.5286 bits (127), Expect = 1.776e-28
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            +LPDL Y Y+ALEP    E M++HH KHHQ Y+ N N  +E+
Sbjct:    4 SLPDLSYAYNALEPFFDEETMRIHHTKHHQNYINNTNSILER 45          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.779e-28
Identity = 53/126 (42.06%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  328 VNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            +NH++++    P   G G  P   LG AID  FGS E   ++ +  G  L GSGWVWL  D   K L +E   N    V K   L PLLG DVWEHAYYL Y+N + D+LK++W++++W      Y
Sbjct:   72 LNHNLYFTQFRP---GKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLASDANGK-LSIEKEPNAGNPVRKG--LNPLLGFDVWEHAYYLTYQNRRADHLKDLWSIVDWDIVESRY 191          

HSP 2 Score: 45.0542 bits (105), Expect = 1.779e-28
Identity = 26/67 (38.81%), Postives = 33/67 (49.25%), Query Frame = 2
Query:  116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316
            T  L  LPY   AL P IS E ++ HH KH + YV N NK +  +       D +T+VQ      FN
Sbjct:    2 THELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLI--IGTEFENADLNTIVQKSEGGIFN 66          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.316e-28
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            NH+ +W +L+P   GGGEP   +L  AI   +GS++A  +  +   A   GSGW WL    +    +V T+    PL T    L   L  DVWEHAYY+ Y+N +P YL+N W ++NW++A+
Sbjct:   73 NHTFYWNSLSP--NGGGEPS-GALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKADGTLDIVNTSNAATPLTTADKAL---LTCDVWEHAYYIDYRNARPKYLENFWALVNWEFAA 188          

HSP 2 Score: 50.8322 bits (120), Expect = 2.316e-28
Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV 241
            TLP LPY   AL P IS E ++ H+ KHHQ YVTN N  +
Sbjct:    4 TLPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLI 43          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.316e-28
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  325 HVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 690
            H NH+ +W  ++P  +GGG+P    L  AID  FGSLE      +       GSGW WL  D   K  V+ T   ++P+        PL+  DVWEHAYY+  +N +P Y+ N W V+NW +
Sbjct:   71 HWNHTFYWHCMSP--DGGGDPS-GELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLVKDNNGKLEVLSTVNARNPMTEGKK---PLMTCDVWEHAYYIDTRNDRPKYVNNFWQVVNWDF 186          

HSP 2 Score: 55.8398 bits (133), Expect = 2.316e-28
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LPDLPY  +ALEP IS E ++ HH KHH+AYV   NK +E
Sbjct:    5 LPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIE 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BORPE (Superoxide dismutase [Mn] OS=Bordetella pertussis GN=sodA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.125e-27
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            GH NHS+ W  ++P    GG  P   L   I    G  +A     +       GSGW WL + T   RL V+++ANQD  + +  T  P+LG+DVWEHAYYLQY+N +P+Y++  + V++W   +  Y+
Sbjct:   78 GHANHSLLWTVMSP---SGGGRPDGRLAADIQAQLGGHDAFQAAFTQAALGRFGSGWAWLTV-TPAGRLRVDSSANQDSPLMEGNT--PILGLDVWEHAYYLQYQNRRPEYIEAFYRVVDWAEVARRYE 200          

HSP 2 Score: 49.6766 bits (117), Expect = 1.125e-27
Identity = 21/40 (52.50%), Postives = 25/40 (62.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP L Y Y ALEP I    M++HH +HHQ YV   N A+E
Sbjct:    5 LPALSYAYDALEPHIDARTMEIHHTRHHQTYVNGLNAALE 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.912e-27
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            NH+ +W  LAP    GGEP    L  AI   FGS      + +       GSGW WL    + K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P+YL++ W ++NW++ +
Sbjct:   73 NHTFYWNCLAP--NAGGEPT-GKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVA 188          

HSP 2 Score: 48.521 bits (114), Expect = 1.912e-27
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP LPY   AL P IS E ++ H+ KHHQ YVTN N  ++
Sbjct:    5 LPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIK 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.912e-27
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            NH+ +W  LAP    GGEP    L  AI   FGS      + +       GSGW WL    + K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P+YL++ W ++NW++ +
Sbjct:   73 NHTFYWNCLAP--NAGGEPT-GKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVA 188          

HSP 2 Score: 48.521 bits (114), Expect = 1.912e-27
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP LPY   AL P IS E ++ H+ KHHQ YVTN N  ++
Sbjct:    5 LPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIK 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.240e-27
Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            NH+ +W +L+P    GG  P  ++  AI+  +GS +A  + ++ +     GS W WL    +    +V T+    PL     T  P+L +D+WEHAYY+ Y+NV+PDYLK  W+++NW++A+
Sbjct:   72 NHTFYWNSLSP---NGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVT--PILTVDLWEHAYYIDYRNVRPDYLKGFWSLVNWEFAN 188          

HSP 2 Score: 46.595 bits (109), Expect = 3.240e-27
Identity = 20/36 (55.56%), Postives = 22/36 (61.11%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN 232
            LP LPY   ALEP IS E ++ HH KHH  YV   N
Sbjct:    4 LPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLN 39          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_NOCAS (Superoxide dismutase [Mn] OS=Nocardia asteroides GN=sodA PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 70/177 (39.55%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  181 YAASSPEASPGLRY*LQQGGRAAFSSFEQSRHFHRRPVAGRYQVQRRGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            Y A +  A   L    + G  +A    E++  FH             GHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG DT  ++L+     +Q   V     ++PLL +D+WEHA+YLQYKNVK DY+   WNV+NW    D + K
Sbjct:   36 YVAGANTALEKLEAAREAGDHSAIFLHEKNLAFHLG-----------GHVNHSIWWKNLSP---NGGDKPVGELAAAIDDQFGSFDKFRAQFTAAANGLQGSGWAVLGYDTLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVTAFWNVVNWADVQDRFGK 196          

HSP 2 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286
            TLPDL YDYSALEP ISG+I +LHH KHH AYV   N A+E+L  A    D S +
Sbjct:    5 TLPDLDYDYSALEPHISGQINELHHSKHHAAYVAGANTALEKLEAAREAGDHSAI 59          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM_PIG1.382e-2852.63Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_BUCAP1.776e-2841.09Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODF_PORGI1.779e-2842.06Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODF_BORPE2.316e-2839.34Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODF_COXBU2.316e-2838.52Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]
SODM_BORPE1.125e-2737.98Superoxide dismutase [Mn] OS=Bordetella pertussis ... [more]
SODF_SALTY1.912e-2739.34Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI1.912e-2739.34Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]
SODF_PSEHT3.240e-2736.07Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODM_NOCAS5.031e-2739.55Superoxide dismutase [Mn] OS=Nocardia asteroides G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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