CN185706
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_PIG (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Sus scrofa GN=SOD2 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.382e-28 Identity = 50/95 (52.63%), Postives = 59/95 (62.11%), Query Frame = 1 Query: 322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 606 GH+NHSIFW NL+P GGGEP L AI FGS E +K++A +QGSGW WLG + E RL + +NQDPL LVPLLGIDV Sbjct: 54 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLVPLLGIDV 144 HSP 2 Score: 57.3806 bits (137), Expect = 1.382e-28 Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 2 Query: 167 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319 I+ +IMQLHH +HH AYV N N E+ +AL K D + V LQ A+KFNG Sbjct: 2 INAQIMQLHHSEHHAAYVNNLNVVEEKYQEALKKGDVTAQVALQPALKFNG 52
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BUCAP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sodA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.776e-28 Identity = 53/129 (41.09%), Postives = 72/129 (55.81%), Query Frame = 1 Query: 322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696 GH+NHS+FWK L G L I+ FGS+E K GSGW+WL +V +T NQD PL+ K+ + P+ G+D+WEHAYYL+Y+N + DY+K+ WNV+NW AS Sbjct: 77 GHINHSLFWKGLKI-----GTILQGDLKSEINKQFGSVEYFKSKFEDIALNHFGSGWIWLVNQNGILSIV--STINQDNPLMGKSISGTHGNPIFGLDLWEHAYYLKYQNRRLDYIKSFWNVVNWDEAS 198 HSP 2 Score: 53.5286 bits (127), Expect = 1.776e-28 Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 2 Query: 122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247 +LPDL Y Y+ALEP E M++HH KHHQ Y+ N N +E+ Sbjct: 4 SLPDLSYAYNALEPFFDEETMRIHHTKHHQNYINNTNSILER 45
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 1.779e-28 Identity = 53/126 (42.06%), Postives = 71/126 (56.35%), Query Frame = 1 Query: 328 VNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705 +NH++++ P G G P LG AID FGS E ++ + G L GSGWVWL D K L +E N V K L PLLG DVWEHAYYL Y+N + D+LK++W++++W Y Sbjct: 72 LNHNLYFTQFRP---GKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLASDANGK-LSIEKEPNAGNPVRKG--LNPLLGFDVWEHAYYLTYQNRRADHLKDLWSIVDWDIVESRY 191 HSP 2 Score: 45.0542 bits (105), Expect = 1.779e-28 Identity = 26/67 (38.81%), Postives = 33/67 (49.25%), Query Frame = 2 Query: 116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316 T L LPY AL P IS E ++ HH KH + YV N NK + + D +T+VQ FN Sbjct: 2 THELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLI--IGTEFENADLNTIVQKSEGGIFN 66
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.316e-28 Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1 Query: 331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696 NH+ +W +L+P GGGEP +L AI +GS++A + + A GSGW WL + +V T+ PL T L L DVWEHAYY+ Y+N +P YL+N W ++NW++A+ Sbjct: 73 NHTFYWNSLSP--NGGGEPS-GALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKADGTLDIVNTSNAATPLTTADKAL---LTCDVWEHAYYIDYRNARPKYLENFWALVNWEFAA 188 HSP 2 Score: 50.8322 bits (120), Expect = 2.316e-28 Identity = 22/40 (55.00%), Postives = 26/40 (65.00%), Query Frame = 2 Query: 122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV 241 TLP LPY AL P IS E ++ H+ KHHQ YVTN N + Sbjct: 4 TLPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLI 43
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.316e-28 Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 1 Query: 325 HVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 690 H NH+ +W ++P +GGG+P L AID FGSLE + GSGW WL D K V+ T ++P+ PL+ DVWEHAYY+ +N +P Y+ N W V+NW + Sbjct: 71 HWNHTFYWHCMSP--DGGGDPS-GELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLVKDNNGKLEVLSTVNARNPMTEGKK---PLMTCDVWEHAYYIDTRNDRPKYVNNFWQVVNWDF 186 HSP 2 Score: 55.8398 bits (133), Expect = 2.316e-28 Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 2 Query: 125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244 LPDLPY +ALEP IS E ++ HH KHH+AYV NK +E Sbjct: 5 LPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIE 44
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BORPE (Superoxide dismutase [Mn] OS=Bordetella pertussis GN=sodA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.125e-27 Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 1 Query: 322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708 GH NHS+ W ++P GG P L I G +A + GSGW WL + T RL V+++ANQD + + T P+LG+DVWEHAYYLQY+N +P+Y++ + V++W + Y+ Sbjct: 78 GHANHSLLWTVMSP---SGGGRPDGRLAADIQAQLGGHDAFQAAFTQAALGRFGSGWAWLTV-TPAGRLRVDSSANQDSPLMEGNT--PILGLDVWEHAYYLQYQNRRPEYIEAFYRVVDWAEVARRYE 200 HSP 2 Score: 49.6766 bits (117), Expect = 1.125e-27 Identity = 21/40 (52.50%), Postives = 25/40 (62.50%), Query Frame = 2 Query: 125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244 LP L Y Y ALEP I M++HH +HHQ YV N A+E Sbjct: 5 LPALSYAYDALEPHIDARTMEIHHTRHHQTYVNGLNAALE 44
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 1.912e-27 Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696 NH+ +W LAP GGEP L AI FGS + + GSGW WL + K +V T+ PL T A PLL +DVWEHAYY+ Y+N +P+YL++ W ++NW++ + Sbjct: 73 NHTFYWNCLAP--NAGGEPT-GKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVA 188 HSP 2 Score: 48.521 bits (114), Expect = 1.912e-27 Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 2 Query: 125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244 LP LPY AL P IS E ++ H+ KHHQ YVTN N ++ Sbjct: 5 LPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIK 44
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 1.912e-27 Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696 NH+ +W LAP GGEP L AI FGS + + GSGW WL + K +V T+ PL T A PLL +DVWEHAYY+ Y+N +P+YL++ W ++NW++ + Sbjct: 73 NHTFYWNCLAP--NAGGEPT-GKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVA 188 HSP 2 Score: 48.521 bits (114), Expect = 1.912e-27 Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 2 Query: 125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244 LP LPY AL P IS E ++ H+ KHHQ YVTN N ++ Sbjct: 5 LPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIK 44
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.240e-27 Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = 1 Query: 331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696 NH+ +W +L+P GG P ++ AI+ +GS +A + ++ + GS W WL + +V T+ PL T P+L +D+WEHAYY+ Y+NV+PDYLK W+++NW++A+ Sbjct: 72 NHTFYWNSLSP---NGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVT--PILTVDLWEHAYYIDYRNVRPDYLKGFWSLVNWEFAN 188 HSP 2 Score: 46.595 bits (109), Expect = 3.240e-27 Identity = 20/36 (55.56%), Postives = 22/36 (61.11%), Query Frame = 2 Query: 125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN 232 LP LPY ALEP IS E ++ HH KHH YV N Sbjct: 4 LPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLN 39
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_NOCAS (Superoxide dismutase [Mn] OS=Nocardia asteroides GN=sodA PE=3 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27 Identity = 70/177 (39.55%), Postives = 93/177 (52.54%), Query Frame = 1 Query: 181 YAASSPEASPGLRY*LQQGGRAAFSSFEQSRHFHRRPVAGRYQVQRRGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711 Y A + A L + G +A E++ FH GHVNHSI+WKNL+P GG+ P L AID FGS + + +A LQGSGW LG DT ++L+ +Q V ++PLL +D+WEHA+YLQYKNVK DY+ WNV+NW D + K Sbjct: 36 YVAGANTALEKLEAAREAGDHSAIFLHEKNLAFHLG-----------GHVNHSIWWKNLSP---NGGDKPVGELAAAIDDQFGSFDKFRAQFTAAANGLQGSGWAVLGYDTLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFYLQYKNVKADYVTAFWNVVNWADVQDRFGK 196 HSP 2 Score: 68.1662 bits (165), Expect = 5.054e-11 Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 2 Query: 122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286 TLPDL YDYSALEP ISG+I +LHH KHH AYV N A+E+L A D S + Sbjct: 5 TLPDLDYDYSALEPHISGQINELHHSKHHAAYVAGANTALEKLEAAREAGDHSAI 59 The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 221
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bpback to top |