CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.296e-25
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 699
            NHS FW ++ P  +GGG+P    L   I+  FGS E   ++   E     GSGW WL       RL +  TAN    +     + PLL  DVWEHAYY+ Y+N +PDY+   I +++NWK+  D
Sbjct:   89 NHSFFWHSIKP--QGGGKPSGKILE-QINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVYHDN--RLQIIKTANAGTPIANG--MKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVED 205          

HSP 2 Score: 48.9062 bits (115), Expect = 1.296e-25
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ 292
            LPDLPYD  + +P  + E    HH KHH AYV N N  ++   + L K D   +++
Sbjct:   16 LPDLPYDKESFKPHFTPETFDYHHGKHHNAYVQNLNNLLKDK-EELQKKDLEEIIE 70          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BUCBP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sodA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.688e-25
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTK---APTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            GH+NHS+FWK L                  ++ +F S++   ++      +  GSGW+WL +      L + TT NQ+ PL+ K     + +P+LG+D+WEHAYYL+YKN + DY+   WNV+NW   S
Sbjct:   77 GHINHSLFWKWLKL-----NTILKDDFKIILEKNFKSVDFFKKQFEKIALSHFGSGWIWL-IKKYDNTLRIVTTVNQNTPLMGKEISGISGIPILGLDLWEHAYYLKYKNNRSDYVNAFWNVVNWDEVS 199          

HSP 2 Score: 52.7582 bits (125), Expect = 1.688e-25
Identity = 26/71 (36.62%), Postives = 36/71 (50.70%), Query Frame = 2
Query:  116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNK----------AVEQLFQALNKVDTSTVVQLQ 298
            T  LP LPY Y++LEP    + M +HH +HHQAY+ N N            +E+L   LN +     + LQ
Sbjct:    2 TYVLPSLPYSYNSLEPFFDEKTMIIHHTRHHQAYINNTNSILNGTHYENLLIEELISKLNILSIENKLALQ 72          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BORBU (Superoxide dismutase [Fe] OS=Borrelia burgdorferi GN=sod PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.845e-25
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            G+ NH+++++ L P   G  +         I+  FGSL+ L   +      + GSGW WL L  E    V+       PL+    +  P+LGIDVWEHAYYL+Y+N + +Y+      +NW+  S VY +
Sbjct:   77 GYSNHTLYFRTLRP---GNKDNLFEKFKDDINAAFGSLDVLKANLKDTAMKIFGSGWAWLVLCPESGLKVISMPNQDSPLMN---SYKPILGIDVWEHAYYLKYQNRRIEYVDAFLKALNWEEVSKVYNE 200          

HSP 2 Score: 53.5286 bits (127), Expect = 4.845e-25
Identity = 22/56 (39.29%), Postives = 37/56 (66.07%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ 292
            LP+L YDY A+EP I  + M++HH KHH  +V N N  +E++ + ++  D S +++
Sbjct:    4 LPELGYDYDAVEPYIDAKTMEIHHSKHHNGFVMNLNSILEKMGK-IHLTDVSNILK 58          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 4.854e-25
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  328 VNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            +NH++++   AP  +     P   LG AI   FGS E   ++ +A    L GSGW WL +D + K  + +     +P+      L PLLG DVWEHAYYL Y+N + D++  +W +++W    DV +K
Sbjct:   73 LNHTLYFLQFAP--KPAKNEPAGKLGEAIKRDFGSFENFKKEFNAASVGLFGSGWAWLSVDKDGKLHITKEPNGSNPV---RAGLKPLLGFDVWEHAYYLDYQNRRADHVNKLWEIIDW----DVVEK 191          

HSP 2 Score: 45.4394 bits (106), Expect = 4.854e-25
Identity = 28/77 (36.36%), Postives = 38/77 (49.35%), Query Frame = 2
Query:  116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN-GEVMSTTQF 343
            T  +P LPY  +ALEP IS + +  H+ KH Q YV N N  V         V+        GAI  N G+V++ T +
Sbjct:    2 TYEMPKLPYANNALEPVISQQTIDYHYGKHLQTYVNNLNSLVPGTEYEGKTVEAIVASAPDGAIFNNAGQVLNHTLY 78          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_PARCL (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Parastichopus californicus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.396e-25
Identity = 46/96 (47.92%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDV 606
            G +NH IFW NL+P  +GGG P    L  AI+  FGS ++    ++A   A+QGSGW WLG D +   L + T  NQDPL  +A T +VPL GIDV
Sbjct:   54 GFINHCIFWTNLSP--QGGGVP-EGDLADAINRDFGSFDSFKTTLTAATVAIQGSGWGWLGFDPKTHHLKIATCVNQDPL--QATTGMVPLFGIDV 144          

HSP 2 Score: 53.5286 bits (127), Expect = 6.396e-25
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 2
Query:  167 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            I G+IM+LHH+KHH  Y  N N A E+L  A  + D   ++ LQ A+KFNG
Sbjct:    2 IIGDIMELHHKKHHATYTNNLNAAEEKLAAAHAEGDIGGMIALQPALKFNG 52          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PLAVI (Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.215e-25
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:   73 NHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          

HSP 2 Score: 42.743 bits (99), Expect = 8.215e-25
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIK 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PLAFX (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3) GN=SODB PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.215e-25
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:   73 NHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          

HSP 2 Score: 42.743 bits (99), Expect = 8.215e-25
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIK 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PLAFA (Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.215e-25
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:   73 NHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          

HSP 2 Score: 42.743 bits (99), Expect = 8.215e-25
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIK 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PLAF7 (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7) GN=SODB PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.215e-25
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:   73 NHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          

HSP 2 Score: 42.743 bits (99), Expect = 8.215e-25
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIK 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.356e-24
Identity = 51/124 (41.13%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTAN-QDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW-NVMNWKYAS 696
            NH  FW+++ P   GGGEP    L   I+  FGS +A +++  A  A   GSGW WL    E K+L +  T N ++PLV       PLL IDVWEHAYYL ++N +PDY+      +++W+  S
Sbjct:   77 NHQFFWESMKP--NGGGEPSGELLE-LINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKPEEKKLALVKTPNAENPLVLG---YTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVS 194          

HSP 2 Score: 41.5874 bits (96), Expect = 2.356e-24
Identity = 17/36 (47.22%), Postives = 22/36 (61.11%), Query Frame = 2
Query:  137 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            PY   ALEP +S    + H  KHH+AYV N NK ++
Sbjct:    8 PYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQID 43          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODF_RICFE1.296e-2539.52Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODM_BUCBP1.688e-2536.43Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODM_BORBU4.845e-2533.85Superoxide dismutase [Fe] OS=Borrelia burgdorferi ... [more]
SODF_BACFR4.854e-2535.94Superoxide dismutase [Fe] OS=Bacteroides fragilis ... [more]
SODM_PARCL6.396e-2547.92Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODF_PLAVI8.215e-2535.43Superoxide dismutase [Fe] OS=Plasmodium vivax GN=S... [more]
SODF_PLAFX8.215e-2535.43Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAFA8.215e-2535.43Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAF78.215e-2535.43Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_NICPL2.356e-2441.13Superoxide dismutase [Fe], chloroplastic (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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