CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_ENTHI (Superoxide dismutase [Fe] OS=Entamoeba histolytica GN=SODB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.072e-24
Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASD 699
            NH+ +WK +     G G  P   L   +   FG LE   +K + +     GSGW WL ++ + K  +++T    +P+      + PLL  DVWEHAYY+  +N +  YL++ WNV+NWK+  +
Sbjct:   74 NHAFYWKCMC----GCGVKPSEQLIAKLTAAFGGLEEFKKKFTEKAVGHFGSGWCWL-VEHDGKLEIIDTHDAVNPMTNG---MKPLLTCDVWEHAYYIDTRNNRAAYLEHWWNVVNWKFVEE 188          

HSP 2 Score: 51.9878 bits (123), Expect = 3.072e-24
Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN---KAVEQLFQALNKV 271
            LP LPY Y+ALEP IS E ++ HH KHH  YV   N   K  EQ  + L ++
Sbjct:    5 LPQLPYAYNALEPHISKETLEFHHDKHHATYVNKLNGLVKGTEQEHKTLEEL 56          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_PALVU (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Palinurus vulgaris PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.109e-24
Identity = 44/95 (46.32%), Postives = 55/95 (57.89%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 606
            GH+NH+IFW N+AP    GGEP    +  AI   FGS +A   K S     ++GSGW WLG   +  +L V T  NQDPL      L+PLLG+DV
Sbjct:   54 GHINHTIFWTNMAP--SAGGEPA-GPVADAITKEFGSFQAFKDKFSTASVGVKGSGWGWLGYCPKNDKLAVATCQNQDPL-QLTHGLIPLLGLDV 144          

HSP 2 Score: 51.9878 bits (123), Expect = 3.109e-24
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 2
Query:  167 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            IS  IMQ+HH KHHQAY+ N     E+L QA    D + +  L  AIKFNG
Sbjct:    2 ISEMIMQIHHTKHHQAYINNLKACTEKLKQAEQANDVAAMNALLPAIKFNG 52          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.749e-24
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 699
            NH+ FW ++ P  +GGG+P    L   I+  FGS E   ++   E     GSGW WL       RL +  TAN    +  A  + PLL  DVWEHAYY+ Y+N +PDY+   I +++NWK+  D
Sbjct:   89 NHTFFWHSIKP--QGGGKPSGKILE-QINKDFGSFEEFCEQFKQEAVGQFGSGWAWLIYHDN--RLQIIKTANAGTPI--AHGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVED 205          

HSP 2 Score: 45.0542 bits (105), Expect = 6.749e-24
Identity = 20/56 (35.71%), Postives = 30/56 (53.57%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ 292
            LPDLPY+  + +P  + E    HH KHH  YV N N  ++   + L K D   +++
Sbjct:   16 LPDLPYEKESFKPHFTLETFDYHHGKHHNTYVQNLNNLLKDK-EELQKKDLEEIIE 70          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.798e-24
Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAY + Y+N +  Y+K  WN++NW +A++  +K
Sbjct:   73 NHTFYWDSMGP--DCGGEP-HGGIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYCIDYRNDRASYVKAWWNLVNWNFANENLKK 194          

HSP 2 Score: 42.743 bits (99), Expect = 8.798e-24
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = 2
Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIK 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.798e-24
Identity = 49/123 (39.84%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYAS 696
            NH+ FW  L     GGG  P   L   ID  FGSL+   ++ S   A   GSGW WL +D      V +T   ++PLV       PLL +DVWEHAYYL ++N +P ++KN + N++NW + +
Sbjct:   79 NHTFFWNCLKA---GGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWL-VDDGGTLKVTKTPNAENPLVHGQK---PLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVA 194          

HSP 2 Score: 44.669 bits (104), Expect = 8.798e-24
Identity = 22/42 (52.38%), Postives = 25/42 (59.52%), Query Frame = 2
Query:  122 TLPDLPYDYSALEP-AISGEIMQLHHQKHHQAYVTNYNKAVE 244
            T P LP+   ALEP  +  E    H+ KHH AYVTN NK VE
Sbjct:    4 TQPPLPFPKDALEPYGMKAETFDYHYGKHHAAYVTNLNKLVE 45          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.491e-23
Identity = 43/122 (35.25%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            NH+ +W  LAP    GGEP    +  AI+  FGS      K +       GS W WL  +      +V T+    P+  +  T  PLL +D+WEHAYY+ Y+N++P Y+   W ++NW + S
Sbjct:   72 NHTFYWNCLAP--NAGGEPT-GEVAAAIEKAFGSFAEFKAKFTDSAINNFGSSWTWLVKNANGSLAIVNTSNAGCPITEEGVT--PLLTVDLWEHAYYIDYRNLRPSYMDGFWALVNWDFVS 188          

HSP 2 Score: 44.2838 bits (103), Expect = 1.491e-23
Identity = 20/40 (50.00%), Postives = 25/40 (62.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP LP+  +ALEP IS E ++ H+ KHH  YV   N  VE
Sbjct:    4 LPALPFAMNALEPHISQETLEYHYGKHHNTYVVKLNGLVE 43          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.935e-23
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 699
            NH+ FW ++ P   GGG+P    L   I+  FGS E   ++  AE     GSGW WL       RL +  TAN    +     + PLL  DVWEHAYY+ Y+N +PDY+   I +++NW++  +
Sbjct:   89 NHTFFWHSIKP--NGGGKPSGKILK-QINEDFGSFEEFCEQFKAEATGQFGSGWAWLVYHNN--RLQIVKTANAGTPIANG--MQPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWEFVEN 205          

HSP 2 Score: 44.669 bits (104), Expect = 1.935e-23
Identity = 17/40 (42.50%), Postives = 25/40 (62.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP+LPY+  + +P  + E  + HH KHH AYV N N  ++
Sbjct:   16 LPNLPYEKESFKPHFTAETFEYHHGKHHNAYVQNLNNLLK 55          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_HALMA (Superoxide dismutase [Mn] OS=Haloarcula marismortui GN=sod PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.521e-23
Identity = 45/130 (34.62%), Postives = 63/130 (48.46%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH  H++FW+N+ P   GGGEP    L   I+  FGS E    K   E AA    GW  L  D   K+L        D          P+L +DVWEH+YY  Y   + D++   + V++W  A++ Y+K
Sbjct:   75 GHYLHTLFWENMDP--NGGGEPEGELLD-RIEEDFGSYEGW--KGEFEAAASAAGGWALLVYDPVAKQLRNVPVDKHDQGALWGSH--PILALDVWEHSYYYDYGPARGDFIDAFFEVVDWDKAAEEYEK 197          

HSP 2 Score: 56.9954 bits (136), Expect = 2.521e-23
Identity = 27/65 (41.54%), Postives = 34/65 (52.31%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            LP LPYDY ALEP IS +++  HH  HHQ YV     A E L +  +  D  +     G +  NG
Sbjct:    9 LPPLPYDYDALEPHISEQVLTWHHDTHHQGYVNGLESAEETLAENRDAGDFGSSAAAMGNVTHNG 73          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.270e-23
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYASDVYQK 711
            NH+ FW +L P    GG  P       I+  FGS + L ++ S   A   GSGW WL +D      V +T   ++PL   A     LL +DVWEHAYY+ ++N +P ++KN + N++NW +A+  Y K
Sbjct:   79 NHTFFWNSLKPA---GGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWL-IDDGGTLKVTKTPNAENPL---AHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWDFAAANYAK 199          

HSP 2 Score: 43.5134 bits (101), Expect = 4.270e-23
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 2
Query:  134 LPYDYSALEP-AISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LPYD++ALE   + GE  + H+ KHH+AYV N NK  +
Sbjct:    8 LPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTD 45          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.549e-23
Identity = 44/124 (35.48%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 699
            NH+ FW ++ P   GGG+P    +   I   FGS E   ++   E     GSGWVW+  +   K  +++T+    P+V     + P+L  DVWEHAYY+ Y+N + DY+   I +++NWK+  D
Sbjct:   89 NHTFFWYSIKP--HGGGKPS-GKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVVYNNN-KLQIIKTSNADTPIVN---LMKPILVCDVWEHAYYIDYRNKRSDYIDIFISHMINWKFVED 205          

HSP 2 Score: 46.595 bits (109), Expect = 5.549e-23
Identity = 26/74 (35.14%), Postives = 38/74 (51.35%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGEVMSTTQFS 346
            LPDLPY   + +P  + E    HH KHH +YV N N  ++   + L K D      L+G IK++ +    T F+
Sbjct:   16 LPDLPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDR-EELQKKD------LEGIIKWSSKNSEVTVFN 82          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODF_ENTHI3.072e-2434.15Superoxide dismutase [Fe] OS=Entamoeba histolytica... [more]
SODM_PALVU3.109e-2446.32Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODF_RICCN6.749e-2439.52Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_PLAMA8.798e-2434.65Superoxide dismutase [Fe] OS=Plasmodium malariae G... [more]
SODF_PLEBO8.798e-2439.84Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_PHOLE1.491e-2335.25Superoxide dismutase [Fe] OS=Photobacterium leiogn... [more]
SODF_RICBR1.935e-2337.90Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODM_HALMA2.521e-2334.62Superoxide dismutase [Mn] OS=Haloarcula marismortu... [more]
SODF_ANASP4.270e-2337.50Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_RICTY5.549e-2335.48Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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