CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.223e-22
Identity = 43/124 (34.68%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NIWNVMNWKYASD 699
            NH+ FW ++ P   GGG+P    +   I   FGS E    +   E     GSGW W+ +  + K  +++T+    P+V     + P+L  DVWEHAYY+ Y+N + DY+   I +++NWK+  D
Sbjct:   89 NHTFFWYSIKP--HGGGKPS-GKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWV-VYHDNKLQIIKTSNAGTPIVN---FMKPILACDVWEHAYYIDYRNKRSDYIDIFIRHMINWKFVED 205          

HSP 2 Score: 48.521 bits (114), Expect = 1.223e-22
Identity = 21/56 (37.50%), Postives = 31/56 (55.36%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ 292
            LPDLPYD  + +P  + E    HH KHH +YV N N  ++   + L K D   +++
Sbjct:   16 LPDLPYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDR-EELQKKDLEEIIE 70          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 2.069e-22
Identity = 49/123 (39.84%), Postives = 70/123 (56.91%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYAS 696
            NH  FW+++ P   GGG  P   L   ++  F S E   ++ +A  A   G+GW WL    E K  VV+T    +PLV  +    PLL IDVWEHAYYL ++N +PDY+K  + N+++W+  S
Sbjct:   86 NHEFFWESMKP---GGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE-KLKVVKTPNAVNPLVLGS---FPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVS 201          

HSP 2 Score: 37.7354 bits (86), Expect = 2.069e-22
Identity = 16/35 (45.71%), Postives = 22/35 (62.86%), Query Frame = 2
Query:  137 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV 241
            P+   ALEP +S + ++ H  KHH+AYV N  K V
Sbjct:   17 PFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQV 51          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM1_HALSA (Superoxide dismutase [Mn] 1 OS=Halobacterium salinarium GN=sod1 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 3.509e-22
Identity = 38/130 (29.23%), Postives = 63/130 (48.46%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+ H++FW++++P    GG+ P  +L   I   FGS E    +   E AA   SGW  L  D+    L      N D          P+L +DVWEH+YY  Y   +  ++   + V++W   ++ +++
Sbjct:   72 GHILHTLFWQSMSPA---GGDEPSGALADRIAADFGSYENW--RAEFEAAASAASGWALLVYDSHSNTLRNVAVDNHDEGALWGSH--PILALDVWEHSYYYDYGPDRGSFVDAFFEVVDWDEPTERFEQ 194          

HSP 2 Score: 59.6918 bits (143), Expect = 3.509e-22
Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            LP LPYDY ALEP IS +++  HH  HHQ YV  +N A E L +     D ++     G +  NG
Sbjct:    6 LPPLPYDYDALEPHISEQVLTWHHDTHHQGYVNGWNDAEETLAENRETGDHASTAGALGDVTHNG 70          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_AERPE (Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix GN=sod PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  286 RPVAGRYQVQRRGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            R V   +     GH+ H+IFW N+AP  +GGG P    +   I+  FG  E      SA    ++G GW  L  D   + L +      + L+T    LVP+L IDVWEHAYYLQYKN +  Y++N WNV+NW
Sbjct:   63 RAVMRDFSFNYAGHIMHTIFWPNMAPPGKGGGTPG-GRVADLIEKQFGGFEKFKALFSAAAKTVEGVGWGVLAFDPLTEELRILQVEKHNVLMTAG--LVPILVIDVWEHAYYLQYKNDRGSYVENWWNVVNW 192          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.875e-21
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            NH  +W  L+P      +     L  A++  FGSLE   +        L GSGW W   + + +++ +++T+  Q P+  K    VPLL +DVWEHAYY+ +KN +P YL+  +  +NW + S  Y+
Sbjct:   72 NHDFYWDCLSPKATALSD----ELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHINWHFVSQCYE 191          

HSP 2 Score: 36.5798 bits (83), Expect = 2.875e-21
Identity = 15/41 (36.59%), Postives = 22/41 (53.66%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            TL +LP+   ++   +S      HH KHHQ YV N N  ++
Sbjct:    3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIK 43          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.741e-21
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            NH  +W  L+P      +     L  A++  FGSLE   +        L GSGW W   + + +++ +++T+  Q P+  K    VPLL +DVWEHAYY+ +KN +P YL+  +  +NW + S  Y+
Sbjct:   72 NHDFYWDCLSPKATALSD----ELKEALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYYIDHKNARPVYLEKFYGHVNWHFVSQCYE 191          

HSP 2 Score: 36.5798 bits (83), Expect = 3.741e-21
Identity = 15/41 (36.59%), Postives = 22/41 (53.66%), Query Frame = 2
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            TL +LP+   ++   +S      HH KHHQ YV N N  ++
Sbjct:    3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIK 43          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.862e-21
Identity = 41/130 (31.54%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHE----GGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            NH  ++  + P+      G  +   ++L  A++  FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY+ ++N +P YL+  +  +NW++ +  Y+
Sbjct:   72 NHDFYFDCIKPITGCGCGGSCQSMDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199          

HSP 2 Score: 41.9726 bits (97), Expect = 4.862e-21
Identity = 18/40 (45.00%), Postives = 22/40 (55.00%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            L  LPYD +A    +S E    HH KHH  YVTN N  ++
Sbjct:    4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIK 43          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM2_HALSA (Superoxide dismutase [Mn] 2 OS=Halobacterium salinarium GN=sod2 PE=3 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 4.875e-21
Identity = 41/121 (33.88%), Postives = 60/121 (49.59%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GH  H++FW++++P  +GGGEP   +L   I   FGS E    +   E AA   SGW  L  D   K+L      N D          P+L +DVWEH+YY  Y   +  ++   + V++W
Sbjct:   72 GHYLHTMFWEHMSP--DGGGEPS-GALADRIAADFGSYENW--RAEFEVAAGAASGWALLVYDPVAKQLRNVAVDNHDEGALWGSH--PILALDVWEHSYYYDYGPDRGSFVDAFFEVIDW 185          

HSP 2 Score: 58.9214 bits (141), Expect = 4.875e-21
Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            LP LPYDY ALEP IS +++  HH  HHQ+YV   N A E L +     D ++     G +  NG
Sbjct:    6 LPSLPYDYDALEPHISEQVVTWHHDTHHQSYVDGLNSAEETLAENRETGDHASTAGALGDVTHNG 70          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.356e-20
Identity = 41/130 (31.54%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHE----GGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            NH  ++  + P       G  +   ++L  A++  FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY+ ++N +P YL+  +  +NW++ +  Y+
Sbjct:   72 NHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199          

HSP 2 Score: 41.9726 bits (97), Expect = 2.356e-20
Identity = 18/40 (45.00%), Postives = 22/40 (55.00%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            L  LPYD +A    +S E    HH KHH  YVTN N  ++
Sbjct:    4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIK 43          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.356e-20
Identity = 41/130 (31.54%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHE----GGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 708
            NH  ++  + P       G  +   ++L  A++  FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY+ ++N +P YL+  +  +NW++ +  Y+
Sbjct:   72 NHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDK--VPLLVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYE 199          

HSP 2 Score: 41.9726 bits (97), Expect = 2.356e-20
Identity = 18/40 (45.00%), Postives = 22/40 (55.00%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            L  LPYD +A    +S E    HH KHH  YVTN N  ++
Sbjct:    4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIK 43          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODF_RICPR1.223e-2234.68Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_ARATH2.069e-2239.84Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODM1_HALSA3.509e-2229.23Superoxide dismutase [Mn] 1 OS=Halobacterium salin... [more]
SODF_AERPE2.418e-2140.60Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix G... [more]
SODF_HELPY2.875e-2133.86Superoxide dismutase [Fe] OS=Helicobacter pylori G... [more]
SODF_HELPJ3.741e-2133.86Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODF_CAMCO4.862e-2131.54Superoxide dismutase [Fe] OS=Campylobacter coli GN... [more]
SODM2_HALSA4.875e-2133.88Superoxide dismutase [Mn] 2 OS=Halobacterium salin... [more]
SODF_CAMJJ2.356e-2031.54Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE2.356e-2031.54Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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